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aseg.stats

aseg.stats 9.6 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0050462 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-200
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0050462
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1297584.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1264234.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1263868.496646, mm^3
    17. 

  17. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 25902.000000, mm^3
    18. 

  18. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 267985.483434, mm^3
    19. 

  19. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 260784.741429, mm^3
    20. 

  20. # Measure Cortex, CortexVol, Total cortical gray matter volume, 528770.224863, mm^3
    21. 

  21. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 253545.682727, mm^3
    22. 

  22. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 253814.589057, mm^3
    23. 

  23. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 507360.271784, mm^3
    24. 

  24. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 70584.000000, mm^3
    25. 

  25. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 726622.224863, mm^3
    26. 

  26. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1134256.496646, mm^3
    27. 

  27. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1108354.496646, mm^3
    28. 

  28. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1106958.000000, mm^3
    29. 

  29. # Measure Mask, MaskVol, Mask Volume, 1807119.000000, mm^3
    30. 

  30. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.719998, unitless
    31. 

  31. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.002727, unitless
    32. 

  32. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 18, unitless
    33. 

  33. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 17, unitless
    34. 

  34. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 35, unitless
    35. 

  35. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1802205.004966, mm^3
    36. 

  36. # SegVolFile mri/aseg.mgz 
    37. 

  37. # SegVolFileTimeStamp  2017/10/08 09:20:12 
    38. 

  38. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt 
    39. 

  39. # ColorTableTimeStamp 2017/01/18 23:00:02 
    40. 

  40. # InVolFile  mri/norm.mgz 
    41. 

  41. # InVolFileTimeStamp  2017/10/08 01:48:44 
    42. 

  42. # InVolFrame 0 
    43. 

  43. # PVVolFile  mri/norm.mgz 
    44. 

  44. # PVVolFileTimeStamp  2017/10/08 01:48:44 
    45. 

  45. # Excluding Cortical Gray and White Matter
    46. 

  46. # ExcludeSegId 0 2 3 41 42 
    47. 

  47. # VoxelVolume_mm3 1 
    48. 

  48. # TableCol  1 ColHeader Index 
    49. 

  49. # TableCol  1 FieldName Index 
    50. 

  50. # TableCol  1 Units     NA 
    51. 

  51. # TableCol  2 ColHeader SegId 
    52. 

  52. # TableCol  2 FieldName Segmentation Id
    53. 

  53. # TableCol  2 Units     NA
    54. 

  54. # TableCol  3 ColHeader NVoxels 
    55. 

  55. # TableCol  3 FieldName Number of Voxels
    56. 

  56. # TableCol  3 Units     unitless
    57. 

  57. # TableCol  4 ColHeader Volume_mm3
    58. 

  58. # TableCol  4 FieldName Volume
    59. 

  59. # TableCol  4 Units     mm^3
    60. 

  60. # TableCol  5 ColHeader StructName
    61. 

  61. # TableCol  5 FieldName Structure Name
    62. 

  62. # TableCol  5 Units     NA
    63. 

  63. # TableCol  6 ColHeader normMean 
    64. 

  64. # TableCol  6 FieldName Intensity normMean
    65. 

  65. # TableCol  6 Units     MR
    66. 

  66. # TableCol  7 ColHeader normStdDev
    67. 

  67. # TableCol  7 FieldName Itensity normStdDev
    68. 

  68. # TableCol  7 Units     MR
    69. 

  69. # TableCol  8 ColHeader normMin
    70. 

  70. # TableCol  8 FieldName Intensity normMin
    71. 

  71. # TableCol  8 Units     MR
    72. 

  72. # TableCol  9 ColHeader normMax
    73. 

  73. # TableCol  9 FieldName Intensity normMax
    74. 

  74. # TableCol  9 Units     MR
    75. 

  75. # TableCol 10 ColHeader normRange
    76. 

  76. # TableCol 10 FieldName Intensity normRange
    77. 

  77. # TableCol 10 Units     MR
    78. 

  78. # NRows 45 
    79. 

  79. # NTableCols 10 
    80. 

  80. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    81. 

  81.   1   4     11606    11907.2  Left-Lateral-Ventricle            17.6581    12.4576     0.0000    84.0000    84.0000 
    82. 

  82.   2   5       497      531.4  Left-Inf-Lat-Vent                 37.7324    15.2383     3.0000    83.0000    80.0000 
    83. 

  83.   3   7     15196    15862.5  Left-Cerebellum-White-Matter      82.9356     7.3771    18.0000   101.0000    83.0000 
    84. 

  84.   4   8     62599    62827.6  Left-Cerebellum-Cortex            55.3745    12.3580     0.0000    94.0000    94.0000 
    85. 

  85.   5  10      9015     8687.0  Left-Thalamus-Proper              85.3113    11.0290    25.0000   111.0000    86.0000 
    86. 

  86.   6  11      4154     4087.0  Left-Caudate                      72.2171     8.9818    30.0000   102.0000    72.0000 
    87. 

  87.   7  12      7003     6871.0  Left-Putamen                      81.4094     7.1967    47.0000   107.0000    60.0000 
    88. 

  88.   8  13      2377     2345.2  Left-Pallidum                     99.8986     4.4482    80.0000   114.0000    34.0000 
    89. 

  89.   9  14      1714     1777.9  3rd-Ventricle                     24.7742    13.8038     2.0000    80.0000    78.0000 
    90. 

  90.  10  15      3894     4060.5  4th-Ventricle                     18.4995     9.6772     2.0000    64.0000    62.0000 
    91. 

  91.  11  16     25670    25870.6  Brain-Stem                        82.4324     9.6579     3.0000   114.0000   111.0000 
    92. 

  92.  12  17      4872     4666.4  Left-Hippocampus                  61.8881     9.8206     8.0000   107.0000    99.0000 
    93. 

  93.  13  18      1851     1837.7  Left-Amygdala                     62.6407     6.9872    35.0000    83.0000    48.0000 
    94. 

  94.  14  24      1840     1789.0  CSF                               31.3429    14.2588     5.0000    85.0000    80.0000 
    95. 

  95.  15  26       724      729.6  Left-Accumbens-area               67.2459     5.6439    37.0000    87.0000    50.0000 
    96. 

  96.  16  28      5232     5086.2  Left-VentralDC                    89.6326    11.5815    26.0000   121.0000    95.0000 
    97. 

  97.  17  30        51       60.3  Left-vessel                       51.0784    11.3857    18.0000    70.0000    52.0000 
    98. 

  98.  18  31       906      827.4  Left-choroid-plexus               47.4415    12.5805    16.0000    80.0000    64.0000 
    99. 

  99.  19  43     11369    11552.9  Right-Lateral-Ventricle           17.9124    12.7281     0.0000    83.0000    83.0000 
    100. 

  100.  20  44       486      506.8  Right-Inf-Lat-Vent                33.9753    15.0185     5.0000    79.0000    74.0000 
    101. 

  101.  21  46     14622    15280.8  Right-Cerebellum-White-Matter     82.3540     7.0598    16.0000   105.0000    89.0000 
    102. 

  102.  22  47     64509    64911.8  Right-Cerebellum-Cortex           55.4647    12.1627     0.0000    94.0000    94.0000 
    103. 

  103.  23  49      8496     8165.6  Right-Thalamus-Proper             83.5820    10.1350    28.0000   108.0000    80.0000 
    104. 

  104.  24  50      4342     4280.1  Right-Caudate                     70.7220     9.3302    30.0000   101.0000    71.0000 
    105. 

  105.  25  51      7143     7054.8  Right-Putamen                     79.0801     7.6862    28.0000   101.0000    73.0000 
    106. 

  106.  26  52      2414     2400.0  Right-Pallidum                    99.7287     4.6119    69.0000   112.0000    43.0000 
    107. 

  107.  27  53      4732     4642.8  Right-Hippocampus                 62.2356     9.8475    16.0000   103.0000    87.0000 
    108. 

  108.  28  54      2182     2125.2  Right-Amygdala                    62.9707     7.3163    32.0000    85.0000    53.0000 
    109. 

  109.  29  58       767      746.6  Right-Accumbens-area              66.7419     6.3067    42.0000    97.0000    55.0000 
    110. 

  110.  30  60      5326     5194.9  Right-VentralDC                   89.7384    11.8462    10.0000   121.0000   111.0000 
    111. 

  111.  31  62        17       18.7  Right-vessel                      51.3529    16.7106    18.0000    69.0000    51.0000 
    112. 

  112.  32  63      1038      967.3  Right-choroid-plexus              46.8545    11.8040    13.0000    90.0000    77.0000 
    113. 

  113.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    114. 

  114.  34  77      1092      922.4  WM-hypointensities                67.4945    11.4500    30.0000   102.0000    72.0000 
    115. 

  115.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    117. 

  117.  37  80         0        0.0  non-WM-hypointensities             0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    120. 

  120.  40  85       203      216.3  Optic-Chiasm                      76.4532    19.1676    28.0000   118.0000    90.0000 
    121. 

  121.  41 251      1112     1037.1  CC_Posterior                     100.4631    16.2716    36.0000   121.0000    85.0000 
    122. 

  122.  42 252       642      570.4  CC_Mid_Posterior                  89.0654    19.4836    12.0000   113.0000   101.0000 
    123. 

  123.  43 253       541      505.3  CC_Central                        95.5305    16.3644    23.0000   120.0000    97.0000 
    124. 

  124.  44 254       704      650.5  CC_Mid_Anterior                   94.2628    17.2436    14.0000   118.0000   104.0000 
    125. 

  125.  45 255      1026      975.8  CC_Anterior                      101.1442    15.3220    24.0000   123.0000    99.0000 
    126.