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stats
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wmparc.stats

wmparc.stats 11 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject 0050272 --surf-wm-vol --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt --etiv 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-622
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0050272
    14. 

  14. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 11698.000000, mm^3
    15. 

  15. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 127843.252181, mm^3
    16. 

  16. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 189954.447997, mm^3
    17. 

  17. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 317797.700178, mm^3
    18. 

  18. # Measure Mask, MaskVol, Mask Volume, 1277358.000000, mm^3
    19. 

  19. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 681274.666823, mm^3
    20. 

  20. # SegVolFile mri/wmparc.mgz 
    21. 

  21. # SegVolFileTimeStamp  2017/10/24 00:06:39 
    22. 

  22. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt 
    23. 

  23. # ColorTableTimeStamp 2017/01/18 23:00:02 
    24. 

  24. # InVolFile  mri/norm.mgz 
    25. 

  25. # InVolFileTimeStamp  2017/10/19 13:15:39 
    26. 

  26. # InVolFrame 0 
    27. 

  27. # PVVolFile  mri/norm.mgz 
    28. 

  28. # PVVolFileTimeStamp  2017/10/19 13:15:39 
    29. 

  29. # ExcludeSegId 0 
    30. 

  30. # Only reporting non-empty segmentations
    31. 

  31. # VoxelVolume_mm3 1 
    32. 

  32. # TableCol  1 ColHeader Index 
    33. 

  33. # TableCol  1 FieldName Index 
    34. 

  34. # TableCol  1 Units     NA 
    35. 

  35. # TableCol  2 ColHeader SegId 
    36. 

  36. # TableCol  2 FieldName Segmentation Id
    37. 

  37. # TableCol  2 Units     NA
    38. 

  38. # TableCol  3 ColHeader NVoxels 
    39. 

  39. # TableCol  3 FieldName Number of Voxels
    40. 

  40. # TableCol  3 Units     unitless
    41. 

  41. # TableCol  4 ColHeader Volume_mm3
    42. 

  42. # TableCol  4 FieldName Volume
    43. 

  43. # TableCol  4 Units     mm^3
    44. 

  44. # TableCol  5 ColHeader StructName
    45. 

  45. # TableCol  5 FieldName Structure Name
    46. 

  46. # TableCol  5 Units     NA
    47. 

  47. # TableCol  6 ColHeader normMean 
    48. 

  48. # TableCol  6 FieldName Intensity normMean
    49. 

  49. # TableCol  6 Units     MR
    50. 

  50. # TableCol  7 ColHeader normStdDev
    51. 

  51. # TableCol  7 FieldName Itensity normStdDev
    52. 

  52. # TableCol  7 Units     MR
    53. 

  53. # TableCol  8 ColHeader normMin
    54. 

  54. # TableCol  8 FieldName Intensity normMin
    55. 

  55. # TableCol  8 Units     MR
    56. 

  56. # TableCol  9 ColHeader normMax
    57. 

  57. # TableCol  9 FieldName Intensity normMax
    58. 

  58. # TableCol  9 Units     MR
    59. 

  59. # TableCol 10 ColHeader normRange
    60. 

  60. # TableCol 10 FieldName Intensity normRange
    61. 

  61. # TableCol 10 Units     MR
    62. 

  62. # NRows 70 
    63. 

  63. # NTableCols 10 
    64. 

  64. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    65. 

  65.   1 3001      1543     1517.5  wm-lh-bankssts                    88.9618    21.6299    33.0000   140.0000   107.0000 
    66. 

  66.   2 3002      2121     2077.2  wm-lh-caudalanteriorcingulate     94.8826    11.4467    65.0000   133.0000    68.0000 
    67. 

  67.   3 3003      1381     1384.8  wm-lh-caudalmiddlefrontal        115.3751    16.5047    69.0000   172.0000   103.0000 
    68. 

  68.   4 3005       987     1024.2  wm-lh-cuneus                      83.9574     9.9508    37.0000   119.0000    82.0000 
    69. 

  69.   5 3006       253      222.6  wm-lh-entorhinal                 106.3083    13.5983    75.0000   139.0000    64.0000 
    70. 

  70.   6 3007      3298     3176.6  wm-lh-fusiform                    89.8960    19.9051    28.0000   142.0000   114.0000 
    71. 

  71.   7 3008      7998     8255.3  wm-lh-inferiorparietal            92.6143    18.3095    16.0000   142.0000   126.0000 
    72. 

  72.   8 3009      3240     3176.8  wm-lh-inferiortemporal            90.6247    17.4747    35.0000   137.0000   102.0000 
    73. 

  73.   9 3010      1231     1199.9  wm-lh-isthmuscingulate            76.1828    23.5404     0.0000   128.0000   128.0000 
    74. 

  74.  10 3011      6049     6365.0  wm-lh-lateraloccipital            89.8251    10.8873    51.0000   130.0000    79.0000 
    75. 

  75.  11 3012      5228     5113.6  wm-lh-lateralorbitofrontal       100.3057    12.8925    40.0000   151.0000   111.0000 
    76. 

  76.  12 3013      2368     2337.5  wm-lh-lingual                     89.9443    17.5020     0.0000   123.0000   123.0000 
    77. 

  77.  13 3014      2844     2888.9  wm-lh-medialorbitofrontal        100.6793    13.2884    67.0000   152.0000    85.0000 
    78. 

  78.  14 3015      2528     2571.9  wm-lh-middletemporal              98.7793    14.4996    43.0000   142.0000    99.0000 
    79. 

  79.  15 3016      1832     1806.1  wm-lh-parahippocampal             99.1157    16.9673    35.0000   130.0000    95.0000 
    80. 

  80.  16 3017      2105     2152.4  wm-lh-paracentral                 93.8969    15.8904     0.0000   138.0000   138.0000 
    81. 

  81.  17 3018      1513     1558.9  wm-lh-parsopercularis            102.5393    13.2008    20.0000   142.0000   122.0000 
    82. 

  82.  18 3019       556      573.8  wm-lh-parsorbitalis              107.4838    12.6771    78.0000   148.0000    70.0000 
    83. 

  83.  19 3020      1798     1772.0  wm-lh-parstriangularis           100.7747    16.3131    42.0000   142.0000   100.0000 
    84. 

  84.  20 3021      2998     3000.2  wm-lh-pericalcarine               83.2015    18.8615     0.0000   124.0000   124.0000 
    85. 

  85.  21 3022      4511     4582.9  wm-lh-postcentral                100.5172    15.9992     0.0000   153.0000   153.0000 
    86. 

  86.  22 3023      2038     2108.2  wm-lh-posteriorcingulate          89.9715    23.1534     0.0000   133.0000   133.0000 
    87. 

  87.  23 3024      4523     4626.4  wm-lh-precentral                 104.1521    14.6028    24.0000   158.0000   134.0000 
    88. 

  88.  24 3025      3130     3168.1  wm-lh-precuneus                   82.7438    23.4029     0.0000   145.0000   145.0000 
    89. 

  89.  25 3026      2082     1880.4  wm-lh-rostralanteriorcingulate    95.0408     8.3385    67.0000   123.0000    56.0000 
    90. 

  90.  26 3027      5187     5352.3  wm-lh-rostralmiddlefrontal       112.3950    17.3862    41.0000   160.0000   119.0000 
    91. 

  91.  27 3028     12013    12330.2  wm-lh-superiorfrontal            100.4696    14.6612     1.0000   172.0000   171.0000 
    92. 

  92.  28 3029      7447     7691.1  wm-lh-superiorparietal            89.9329    23.6797     0.0000   171.0000   171.0000 
    93. 

  93.  29 3030      3253     3380.1  wm-lh-superiortemporal           103.4138    11.5472    70.0000   137.0000    67.0000 
    94. 

  94.  30 3031      6677     6840.6  wm-lh-supramarginal              100.0136    16.1625     0.0000   142.0000   142.0000 
    95. 

  95.  31 3032       301      319.3  wm-lh-frontalpole                113.4551    12.9273    78.0000   151.0000    73.0000 
    96. 

  96.  32 3033       168      167.5  wm-lh-temporalpole               105.4940    10.4463    82.0000   135.0000    53.0000 
    97. 

  97.  33 3034       516      500.5  wm-lh-transversetemporal         101.9070    11.4079    75.0000   128.0000    53.0000 
    98. 

  98.  34 3035      4748     4611.4  wm-lh-insula                      94.2963    14.3490     0.0000   128.0000   128.0000 
    99. 

  99.  35 4001      1250     1229.1  wm-rh-bankssts                    99.7576    11.4012    73.0000   141.0000    68.0000 
    100. 

  100.  36 4002      3274     3277.0  wm-rh-caudalanteriorcingulate     94.3696    16.6442     6.0000   134.0000   128.0000 
    101. 

  101.  37 4003      3790     3800.4  wm-rh-caudalmiddlefrontal         97.5053    10.1595    69.0000   143.0000    74.0000 
    102. 

  102.  38 4005      1088     1127.7  wm-rh-cuneus                      74.0744     5.8092    54.0000    97.0000    43.0000 
    103. 

  103.  39 4006      2035     2124.6  wm-rh-entorhinal                  91.7219     9.7817    65.0000   124.0000    59.0000 
    104. 

  104.  40 4007      7800     7898.5  wm-rh-fusiform                    95.8222    12.3845    23.0000   133.0000   110.0000 
    105. 

  105.  41 4008      5534     5561.5  wm-rh-inferiorparietal            91.9221    17.3368     0.0000   151.0000   151.0000 
    106. 

  106.  42 4009      5699     5721.4  wm-rh-inferiortemporal            93.1935    10.1938    68.0000   140.0000    72.0000 
    107. 

  107.  43 4010      2322     2450.1  wm-rh-isthmuscingulate            93.6494    11.9663    65.0000   131.0000    66.0000 
    108. 

  108.  44 4011      7133     7396.5  wm-rh-lateraloccipital            96.5204    12.8976    56.0000   145.0000    89.0000 
    109. 

  109.  45 4012      7120     7051.9  wm-rh-lateralorbitofrontal        85.2649    18.1546     0.0000   135.0000   135.0000 
    110. 

  110.  46 4013      5418     5778.1  wm-rh-lingual                     91.9509    12.4267    39.0000   137.0000    98.0000 
    111. 

  111.  47 4014      4256     4287.4  wm-rh-medialorbitofrontal         97.5698    11.1149    58.0000   138.0000    80.0000 
    112. 

  112.  48 4015      3049     3186.5  wm-rh-middletemporal             103.1328    14.4322    67.0000   150.0000    83.0000 
    113. 

  113.  49 4016      5826     5868.2  wm-rh-parahippocampal             95.6723    11.4370    57.0000   133.0000    76.0000 
    114. 

  114.  50 4017       135      141.1  wm-rh-paracentral                103.7704     5.8283    89.0000   117.0000    28.0000 
    115. 

  115.  51 4018      2468     2462.1  wm-rh-parsopercularis             94.6754     9.8642    68.0000   127.0000    59.0000 
    116. 

  116.  52 4019       699      703.4  wm-rh-parsorbitalis               94.4964    11.0024    72.0000   128.0000    56.0000 
    117. 

  117.  53 4020      1798     1808.8  wm-rh-parstriangularis            93.3454     9.8605    70.0000   121.0000    51.0000 
    118. 

  118.  54 4021      3336     3260.3  wm-rh-pericalcarine               91.4820    14.8464    41.0000   136.0000    95.0000 
    119. 

  119.  55 4022     12201    12427.7  wm-rh-postcentral                 98.2982    11.6738    39.0000   148.0000   109.0000 
    120. 

  120.  56 4023      6766     6856.4  wm-rh-posteriorcingulate          93.1320    11.3747    30.0000   141.0000   111.0000 
    121. 

  121.  57 4024     13553    13755.9  wm-rh-precentral                 100.4274    11.7955    56.0000   144.0000    88.0000 
    122. 

  122.  58 4025      2809     2565.4  wm-rh-precuneus                   85.8587    12.5436    25.0000   128.0000   103.0000 
    123. 

  123.  59 4026      2118     2113.5  wm-rh-rostralanteriorcingulate    94.3281    11.9740    36.0000   131.0000    95.0000 
    124. 

  124.  60 4027      6330     6447.9  wm-rh-rostralmiddlefrontal        95.5730    11.4312    57.0000   138.0000    81.0000 
    125. 

  125.  61 4028      9756     9600.2  wm-rh-superiorfrontal             92.1094    19.3849     0.0000   140.0000   140.0000 
    126. 

  126.  62 4029      6706     6940.8  wm-rh-superiorparietal            84.3497    16.9959     0.0000   131.0000   131.0000 
    127. 

  127.  63 4030      4697     4678.9  wm-rh-superiortemporal           100.7992    15.5836    52.0000   177.0000   125.0000 
    128. 

  128.  64 4031     10060    10174.0  wm-rh-supramarginal               98.1169    12.4927     0.0000   154.0000   154.0000 
    129. 

  129.  65 4032       172      167.3  wm-rh-frontalpole                100.7209     9.6955    77.0000   134.0000    57.0000 
    130. 

  130.  66 4033       442      475.8  wm-rh-temporalpole                84.9638     7.6324    67.0000   104.0000    37.0000 
    131. 

  131.  67 4034      1221     1178.1  wm-rh-transversetemporal          99.6339    12.1310    50.0000   150.0000   100.0000 
    132. 

  132.  68 4035     14093    14194.5  wm-rh-insula                      89.4313    17.4791     0.0000   147.0000   147.0000 
    133. 

  133.  69 5001     15774    15270.3  Left-UnsegmentedWhiteMatter       84.4542    25.8770     0.0000   143.0000   143.0000 
    134. 

  134.  70 5002     21483    20854.4  Right-UnsegmentedWhiteMatter      80.7246    26.5909     0.0000   145.0000   145.0000 
    135.