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- # Title Segmentation Statistics
- #
- # generating_program mri_segstats
- # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0050144
- # sysname Linux
- # hostname tars-951
- # machine x86_64
- # user ntraut
- # anatomy_type volume
- #
- # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- # subjectname 0050144
- # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1472058.000000, mm^3
- # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1461498.000000, mm^3
- # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1462230.559617, mm^3
- # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 7744.000000, mm^3
- # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 344947.111953, mm^3
- # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 351041.447261, mm^3
- # Measure Cortex, CortexVol, Total cortical gray matter volume, 695988.559214, mm^3
- # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 260056.724887, mm^3
- # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 263832.275516, mm^3
- # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 523889.000403, mm^3
- # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 68142.000000, mm^3
- # Measure TotalGray, TotalGrayVol, Total gray matter volume, 908161.559214, mm^3
- # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1298300.559617, mm^3
- # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1290556.559617, mm^3
- # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1287177.000000, mm^3
- # Measure Mask, MaskVol, Mask Volume, 1926696.000000, mm^3
- # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.812832, unitless
- # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.063872, unitless
- # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 62, unitless
- # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 48, unitless
- # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 110, unitless
- # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1811023.126590, mm^3
- # SegVolFile mri/aseg.mgz
- # SegVolFileTimeStamp 2017/10/08 03:43:17
- # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt
- # ColorTableTimeStamp 2017/01/18 23:00:02
- # InVolFile mri/norm.mgz
- # InVolFileTimeStamp 2017/10/07 18:20:58
- # InVolFrame 0
- # PVVolFile mri/norm.mgz
- # PVVolFileTimeStamp 2017/10/07 18:20:58
- # Excluding Cortical Gray and White Matter
- # ExcludeSegId 0 2 3 41 42
- # VoxelVolume_mm3 1
- # TableCol 1 ColHeader Index
- # TableCol 1 FieldName Index
- # TableCol 1 Units NA
- # TableCol 2 ColHeader SegId
- # TableCol 2 FieldName Segmentation Id
- # TableCol 2 Units NA
- # TableCol 3 ColHeader NVoxels
- # TableCol 3 FieldName Number of Voxels
- # TableCol 3 Units unitless
- # TableCol 4 ColHeader Volume_mm3
- # TableCol 4 FieldName Volume
- # TableCol 4 Units mm^3
- # TableCol 5 ColHeader StructName
- # TableCol 5 FieldName Structure Name
- # TableCol 5 Units NA
- # TableCol 6 ColHeader normMean
- # TableCol 6 FieldName Intensity normMean
- # TableCol 6 Units MR
- # TableCol 7 ColHeader normStdDev
- # TableCol 7 FieldName Itensity normStdDev
- # TableCol 7 Units MR
- # TableCol 8 ColHeader normMin
- # TableCol 8 FieldName Intensity normMin
- # TableCol 8 Units MR
- # TableCol 9 ColHeader normMax
- # TableCol 9 FieldName Intensity normMax
- # TableCol 9 Units MR
- # TableCol 10 ColHeader normRange
- # TableCol 10 FieldName Intensity normRange
- # TableCol 10 Units MR
- # NRows 45
- # NTableCols 10
- # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
- 1 4 3508 3854.6 Left-Lateral-Ventricle 39.1819 17.1262 7.0000 106.0000 99.0000
- 2 5 472 542.4 Left-Inf-Lat-Vent 42.3157 16.0507 6.0000 79.0000 73.0000
- 3 7 15314 15497.8 Left-Cerebellum-White-Matter 84.7035 7.1807 25.0000 107.0000 82.0000
- 4 8 71340 71472.0 Left-Cerebellum-Cortex 63.8782 9.7951 7.0000 106.0000 99.0000
- 5 10 9073 8713.5 Left-Thalamus-Proper 81.0843 8.2564 40.0000 105.0000 65.0000
- 6 11 4399 4397.6 Left-Caudate 74.4701 6.5484 43.0000 103.0000 60.0000
- 7 12 5272 5287.2 Left-Putamen 79.2265 6.1080 24.0000 103.0000 79.0000
- 8 13 2801 2611.3 Left-Pallidum 87.6680 6.3283 39.0000 102.0000 63.0000
- 9 14 770 846.7 3rd-Ventricle 40.5558 13.0056 13.0000 78.0000 65.0000
- 10 15 1360 1518.2 4th-Ventricle 28.8000 11.5277 10.0000 71.0000 61.0000
- 11 16 22675 22482.0 Brain-Stem 83.5529 9.5714 30.0000 116.0000 86.0000
- 12 17 4319 4108.6 Left-Hippocampus 66.6580 8.5902 15.0000 100.0000 85.0000
- 13 18 1989 1947.8 Left-Amygdala 67.6963 6.7100 32.0000 99.0000 67.0000
- 14 24 686 691.1 CSF 48.1851 12.0701 15.0000 77.0000 62.0000
- 15 26 670 693.4 Left-Accumbens-area 70.7910 3.6573 57.0000 86.0000 29.0000
- 16 28 4703 4497.8 Left-VentralDC 85.9466 10.0690 26.0000 114.0000 88.0000
- 17 30 21 24.9 Left-vessel 58.1429 8.1749 36.0000 69.0000 33.0000
- 18 31 322 285.7 Left-choroid-plexus 54.2888 11.8650 24.0000 86.0000 62.0000
- 19 43 2847 3139.9 Right-Lateral-Ventricle 40.3312 14.7413 11.0000 97.0000 86.0000
- 20 44 261 303.6 Right-Inf-Lat-Vent 37.3027 12.9702 9.0000 87.0000 78.0000
- 21 46 14789 14972.3 Right-Cerebellum-White-Matter 85.4968 7.0455 27.0000 108.0000 81.0000
- 22 47 71528 71670.8 Right-Cerebellum-Cortex 64.2432 9.0834 19.0000 100.0000 81.0000
- 23 49 9519 9192.6 Right-Thalamus-Proper 81.4184 8.1243 33.0000 104.0000 71.0000
- 24 50 4747 4713.3 Right-Caudate 74.9069 6.4901 43.0000 100.0000 57.0000
- 25 51 5778 5632.9 Right-Putamen 79.0980 6.3723 19.0000 98.0000 79.0000
- 26 52 2427 2258.6 Right-Pallidum 88.5492 5.6776 35.0000 101.0000 66.0000
- 27 53 4651 4469.4 Right-Hippocampus 66.5676 8.4199 17.0000 97.0000 80.0000
- 28 54 2200 2129.7 Right-Amygdala 66.7564 7.0855 11.0000 93.0000 82.0000
- 29 58 745 741.1 Right-Accumbens-area 71.6456 5.0381 56.0000 94.0000 38.0000
- 30 60 4901 4644.6 Right-VentralDC 83.1067 12.2873 15.0000 107.0000 92.0000
- 31 62 56 67.4 Right-vessel 39.6964 14.1882 17.0000 66.0000 49.0000
- 32 63 334 302.3 Right-choroid-plexus 56.9341 13.3808 25.0000 83.0000 58.0000
- 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000
- 34 77 2177 2191.4 WM-hypointensities 70.8516 9.9081 12.0000 107.0000 95.0000
- 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 37 80 0 0.0 non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 40 85 193 202.2 Optic-Chiasm 78.7306 16.5485 40.0000 107.0000 67.0000
- 41 251 959 887.8 CC_Posterior 96.6329 12.6740 43.0000 116.0000 73.0000
- 42 252 617 567.0 CC_Mid_Posterior 91.2885 15.0498 34.0000 110.0000 76.0000
- 43 253 639 580.2 CC_Central 91.6933 15.1786 46.0000 112.0000 66.0000
- 44 254 697 598.9 CC_Mid_Anterior 93.8981 17.2870 32.0000 117.0000 85.0000
- 45 255 971 920.7 CC_Anterior 102.8836 13.5874 34.0000 123.0000 89.0000
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