We use cookies to ensure you get the best experience on our website
Startsida Utforska Hjälp News
Registrera dig Logga in

Scheduled service maintenance on November 22

On Friday, November 22, 2024, between 06:00 CET and 18:00 CET, GIN services will undergo planned maintenance. Extended service interruptions should be expected. We will try to keep downtimes to a minimum, but recommend that users avoid critical tasks, large data uploads, or DOI requests during this time.

We apologize for any inconvenience.

reema
/
ephy_testing_data
forkad från NeuralEnsemble/ephy_testing_data
1
0
Fork 0
Filer

Collection of testing data in various electrophysiology file formats.

Gren: synced/add/utils
Grenar Taggar
ephy_testing...
sprenger b47553dc7d gin commit from nit-ope-de04 2 år sedan
alphaomega 428590b417 Better describe test dataset 3 år sedan
asciisignal e5dbc29dfd gin commit from hambach37 3 år sedan
asciispiketrain e5dbc29dfd gin commit from hambach37 3 år sedan
axograph e5dbc29dfd gin commit from hambach37 3 år sedan
axon e5dbc29dfd gin commit from hambach37 3 år sedan
axona fcb3f31bfd gin commit from nit-ope-de04 3 år sedan
bci2000 e5dbc29dfd gin commit from hambach37 3 år sedan
biocam 651d5c8cc0 gin commit from bs-mbpr415.d.ethz.ch 3 år sedan
blackrock e5dbc29dfd gin commit from hambach37 3 år sedan
brainvision e5dbc29dfd gin commit from hambach37 3 år sedan
brainwaredam e5dbc29dfd gin commit from hambach37 3 år sedan
brainwaref32 e5dbc29dfd gin commit from hambach37 3 år sedan
brainwaresrc e5dbc29dfd gin commit from hambach37 3 år sedan
cellexplorer 56ff9cd024 gin commit from nit-ope-de04 2 år sedan
edf 8f58275392 gin commit from nit-ope-de04 3 år sedan
elan e5dbc29dfd gin commit from hambach37 3 år sedan
elphy e5dbc29dfd gin commit from hambach37 3 år sedan
igor e5dbc29dfd gin commit from hambach37 3 år sedan
intan e5dbc29dfd gin commit from hambach37 3 år sedan
klustakwik e5dbc29dfd gin commit from hambach37 3 år sedan
kwik e5dbc29dfd gin commit from hambach37 3 år sedan
maxwell 167fd83cd9 gin commit from nit-ope-de04 3 år sedan
mearec e5dbc29dfd gin commit from hambach37 3 år sedan
micromed e5dbc29dfd gin commit from hambach37 3 år sedan
neohdf5 e5dbc29dfd gin commit from hambach37 3 år sedan
nest e5dbc29dfd gin commit from hambach37 3 år sedan
neuralynx bd4dc856d6 gin commit from nit-ope-de04 3 år sedan
neuroexplorer e5dbc29dfd gin commit from hambach37 3 år sedan
neuroscope 9e11e4dd65 gin commit from nit-ope-de04 2 år sedan
neuroshare e5dbc29dfd gin commit from hambach37 3 år sedan
nix e5dbc29dfd gin commit from hambach37 3 år sedan
nwb 3bbead7d3e locking nwb file 3 år sedan
openephys e5dbc29dfd gin commit from hambach37 3 år sedan
openephysbinary d65f468203 gin commit from nit-ope-de04 2 år sedan
phy e5dbc29dfd gin commit from hambach37 3 år sedan
plexon e5dbc29dfd gin commit from hambach37 3 år sedan
rawbinarysignal e5dbc29dfd gin commit from hambach37 3 år sedan
rawmcs e5dbc29dfd gin commit from hambach37 3 år sedan
spike2 9a6519c232 gin commit from samuel-pc 3 år sedan
spikegadgets da4edad8f0 gin commit from nit-ope-de04 3 år sedan
spikeglx 2a98caf770 gin commit from samuel-pc 2 år sedan
spykingcircus e5dbc29dfd gin commit from hambach37 3 år sedan
stimfit e5dbc29dfd gin commit from hambach37 3 år sedan
tdt d4c2e00eeb gin commit from nit-ope-de04 2 år sedan
tridesclous e5dbc29dfd gin commit from hambach37 3 år sedan
winedr e5dbc29dfd gin commit from hambach37 3 år sedan
winwcp e5dbc29dfd gin commit from hambach37 3 år sedan
.gitattributes 960807718a gin commit from nit-ope-de04 2 år sedan
.gitignore de5d0afded gin commit from hambach37 3 år sedan
LICENSE de5d0afded gin commit from hambach37 3 år sedan
README.md 5ff8d2acd2 gin commit from nit-ope-de04 3 år sedan
config.yml 6913158c49 gin commit from nit-ope-de04 2 år sedan
utils.py b47553dc7d gin commit from nit-ope-de04 2 år sedan

README.md

Electrophysiology Testing Data

Collection of testing data in various electrophysiology file formats. The datasets in this repository are used within the Neo project.

Contributing

If you have small data files in a format used in electrophysiology and you want to make these files publicly available for the purpose of software building on that format, then this is the right place to contribute!

Requirements

To contribute a dataset the following criteria need to be fulfilled

  • You need to have the rights to publish the data files
  • The data files need to be small in size (ideally in the range of kilobytes, no more than 10MB)

How to add files

To add files to the repository please follow the steps below.

1) On the gin platform

  • Create a gin account
  • Open an issue stating the format of files you would like to add. Please specify in this issue, which type of system is generating these files and in which software your files could be used as testing files. After reviewing the proposed format you will be added as a collaborator to the project.

2) On your local computer

  • Install the gin client on your machine (gin-cli setup instructions)
  • Log in with your gin-cli (gin login)
  • Create a local copy of the repository on your machine (gin get NeuralEnsemble/ephy_testing_data)
  • Create a new git branch to work on via gin git checkout -b <my_branch_name>
  • Create a new subfolder with the corresponding system brand name or identify the folder to which to add your files.
  • Copy your files in the new folder. Feel free to add an attribution to it, e.g. see this readme.
  • Commit your files via gin commit <folder_name>
  • Lock the files via gin lock *
  • Upload your changes to gin via gin upload

Note: You can also commit files using any other git-annex capable tool. However, make sure that the .gitattributes specifications are respected and files are committed in a locked state. Only the README and LICENCE file should be committed to git, all other files should be tracked by git-annex.

3) On the gin platform

  • The new branch <my_branch_name> should be available at the webpage. Verify that the changes are correctly registered in this branch.
  • Open a pull request (PR) with your changes to the master branch of the NeuralEnsemble/ephy_testing_data repository. In your PR description please specify again what format you want to add, which type of system is generating these files and which software could make use of these.
  • You will potentially receive comments from the repository maintainers asking you to change some details in your PR. Please do not merge your own pull request!
  • After resolving the comments your files will be merged into the main repository. Congratulation! Your files are now part of the growing collection of electrophysiology testing files and can now be used by any project to check for file format compatibility.

Note: Don't forget to switch back to the master branch after completion of your PR: gin git checkout master