Isaac Racine
6d8b6c0b55
more analyses and project done
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1 week ago | |
|---|---|---|
| .. | ||
| data | 3 weeks ago | |
| images | 3 weeks ago | |
| Exercise 0 - Visualizing Spike Trains.ipynb | 1 week ago | |
| Exercise 1 - Crosscorrelations.ipynb | 1 week ago | |
| Exercise 2 - Unitary Event Analysis.ipynb | 3 weeks ago | |
| Exercise 3 - Higher Order Correlations.ipynb | 1 week ago | |
| README.md | 3 weeks ago | |
| environment.yml | 3 weeks ago | |
| utils.py | 3 weeks ago | |
README.md
spike_train_analysis
Materials for Spike Train Analysis tutorials
Setting up the environment
An environment.yml file is provided to install all dependencies.
Alternative manual installation:
- > mamba create --name andani_gruen python=3.11 numpy scipy statsmodels matplotlib tqdm ipykernel
- > conda activate andani_gruen
- > pip install neo<0.13.4
- > pip install elephant==1.1.0
- > pip install viziphant
- > python -m ipykernel install --user --name andani_gruen
- If jupyter-lab is not installed:
- > conda install jupyterlab
- If jupyter-lab raises ImportError:
- > conda install chardet
Running the notebooks
- Make sure that the kernel "andani_gruen" is used to run the notebook.