stimulating_modular_cultures/README.md

Stimulating Modular Cultures

Data repository

This repository contains experimental data, processed analysis results, and rendered movies to accompany the paper.

Citable reference:

@misc{yamamoto_modular_2022,
  title = {Modular Architecture Facilitates Noise-Driven Control of Synchrony in Neuronal Networks},
  author = {Yamamoto, Hideaki and Spitzner, F. Paul and Takemuro, Taiki and Buend{\'i}a, Victor and Morante, Carla and Konno, Tomohiro and Sato, Shigeo and {Hirano-Iwata}, Ayumi and Priesemann, Viola and Mu{\~n}oz, Miguel A. and Zierenberg, Johannes and Soriano, Jordi},
  year = {2022},
  eprint = {2205.10563},
  eprinttype = {arxiv},
  primaryclass = {q-bio},
  institution = {{arXiv}},
  doi = {10.48550/arXiv.2205.10563},
  url = {http://arxiv.org/abs/2205.10563},
  archiveprefix = {arXiv},
}

The source code is available via GitHub: https://github.com/Priesemann-Group/stimulating_modular_cultures

To enable plot scripts using the downloaded data (this repo), extract the zip files and place the /dat/ folder inside the base directory of the GitHub repository.

The following structure is assumed:

stimulating_modular_cultures (code repo)/
├── ana/paper_plots.py
├── ...
└── dat/
    ├── experiments/
    │   ├── processed/ (extracted zip)
    │   └── raw/       (extracted zip)
    │       └── 1b/realization_id (e.g. 210315_A)
    └── simulations/
        ├── lif/
        │   ├── processed/ (extracted zip)
        │   └── raw/       (not provided)
        └── meso/
            ├── processed/ (extracted zip)
            └── raw/       (not provided)
...