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freesurfer-6.0.1
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sub-06
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stats
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wmparc.stats

wmparc.stats 11 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject sub-06 --surf-wm-vol --ctab /opt/freesurfer/WMParcStatsLUT.txt --etiv 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname nid00783
    8. 

  8. # machine  x86_64
    9. 

  9. # user     oesteban
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /corral-repl/utexas/poldracklab/data/OpenNeuro/ds000114/derivatives/freesurfer-6.0.1
    13. 

  13. # subjectname sub-06
    14. 

  14. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 16058.000000, mm^3
    15. 

  15. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 230797.885012, mm^3
    16. 

  16. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 231450.179568, mm^3
    17. 

  17. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 462248.064580, mm^3
    18. 

  18. # Measure Mask, MaskVol, Mask Volume, 1454513.000000, mm^3
    19. 

  19. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1492612.069815, mm^3
    20. 

  20. # SegVolFile mri/wmparc.mgz 
    21. 

  21. # SegVolFileTimeStamp  2019/10/16 21:35:47 
    22. 

  22. # ColorTable /opt/freesurfer/WMParcStatsLUT.txt 
    23. 

  23. # ColorTableTimeStamp 2017/10/20 18:17:30 
    24. 

  24. # InVolFile  mri/norm.mgz 
    25. 

  25. # InVolFileTimeStamp  2019/10/16 17:26:10 
    26. 

  26. # InVolFrame 0 
    27. 

  27. # PVVolFile  mri/norm.mgz 
    28. 

  28. # PVVolFileTimeStamp  2019/10/16 17:26:10 
    29. 

  29. # ExcludeSegId 0 
    30. 

  30. # Only reporting non-empty segmentations
    31. 

  31. # VoxelVolume_mm3 1 
    32. 

  32. # TableCol  1 ColHeader Index 
    33. 

  33. # TableCol  1 FieldName Index 
    34. 

  34. # TableCol  1 Units     NA 
    35. 

  35. # TableCol  2 ColHeader SegId 
    36. 

  36. # TableCol  2 FieldName Segmentation Id
    37. 

  37. # TableCol  2 Units     NA
    38. 

  38. # TableCol  3 ColHeader NVoxels 
    39. 

  39. # TableCol  3 FieldName Number of Voxels
    40. 

  40. # TableCol  3 Units     unitless
    41. 

  41. # TableCol  4 ColHeader Volume_mm3
    42. 

  42. # TableCol  4 FieldName Volume
    43. 

  43. # TableCol  4 Units     mm^3
    44. 

  44. # TableCol  5 ColHeader StructName
    45. 

  45. # TableCol  5 FieldName Structure Name
    46. 

  46. # TableCol  5 Units     NA
    47. 

  47. # TableCol  6 ColHeader normMean 
    48. 

  48. # TableCol  6 FieldName Intensity normMean
    49. 

  49. # TableCol  6 Units     MR
    50. 

  50. # TableCol  7 ColHeader normStdDev
    51. 

  51. # TableCol  7 FieldName Itensity normStdDev
    52. 

  52. # TableCol  7 Units     MR
    53. 

  53. # TableCol  8 ColHeader normMin
    54. 

  54. # TableCol  8 FieldName Intensity normMin
    55. 

  55. # TableCol  8 Units     MR
    56. 

  56. # TableCol  9 ColHeader normMax
    57. 

  57. # TableCol  9 FieldName Intensity normMax
    58. 

  58. # TableCol  9 Units     MR
    59. 

  59. # TableCol 10 ColHeader normRange
    60. 

  60. # TableCol 10 FieldName Intensity normRange
    61. 

  61. # TableCol 10 Units     MR
    62. 

  62. # NRows 70 
    63. 

  63. # NTableCols 10 
    64. 

  64. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    65. 

  65.   1 3001      3385     3280.7  wm-lh-bankssts                    97.1247     9.4374    67.0000   113.0000    46.0000 
    66. 

  66.   2 3002      2648     2624.0  wm-lh-caudalanteriorcingulate    100.3210    13.3348    30.0000   122.0000    92.0000 
    67. 

  67.   3 3003      5723     5614.2  wm-lh-caudalmiddlefrontal         95.8662    10.1845    65.0000   115.0000    50.0000 
    68. 

  68.   4 3005      3075     2977.0  wm-lh-cuneus                      91.1369    11.7137    62.0000   122.0000    60.0000 
    69. 

  69.   5 3006       677      752.0  wm-lh-entorhinal                  75.7976     8.8312    53.0000    98.0000    45.0000 
    70. 

  70.   6 3007      7090     6985.0  wm-lh-fusiform                    87.0915    12.3735    36.0000   117.0000    81.0000 
    71. 

  71.   7 3008      8904     8760.1  wm-lh-inferiorparietal            91.6963    11.0641    59.0000   115.0000    56.0000 
    72. 

  72.   8 3009      7427     7406.5  wm-lh-inferiortemporal            87.9098    13.1482    50.0000   116.0000    66.0000 
    73. 

  73.   9 3010      4121     4175.8  wm-lh-isthmuscingulate            96.9786    12.2152    30.0000   128.0000    98.0000 
    74. 

  74.  10 3011     10437    10427.4  wm-lh-lateraloccipital            92.1553    11.9441    60.0000   119.0000    59.0000 
    75. 

  75.  11 3012      6900     6798.9  wm-lh-lateralorbitofrontal        92.6891    12.6681    54.0000   117.0000    63.0000 
    76. 

  76.  12 3013      6048     5926.4  wm-lh-lingual                     87.5369    12.0806    22.0000   117.0000    95.0000 
    77. 

  77.  13 3014      3147     3091.2  wm-lh-medialorbitofrontal         89.6835    14.2850    42.0000   120.0000    78.0000 
    78. 

  78.  14 3015      6074     6132.4  wm-lh-middletemporal              90.6692    12.4630    53.0000   116.0000    63.0000 
    79. 

  79.  15 3016      1346     1408.7  wm-lh-parahippocampal             83.5706     9.4282    57.0000   106.0000    49.0000 
    80. 

  80.  16 3017      3312     3284.1  wm-lh-paracentral                 93.4179     9.3799    64.0000   111.0000    47.0000 
    81. 

  81.  17 3018      5043     4976.6  wm-lh-parsopercularis             92.1065    11.7324    59.0000   115.0000    56.0000 
    82. 

  82.  18 3019      1008     1009.2  wm-lh-parsorbitalis               86.7669    11.2045    62.0000   112.0000    50.0000 
    83. 

  83.  19 3020      3748     3662.9  wm-lh-parstriangularis            91.5888    11.2370    61.0000   111.0000    50.0000 
    84. 

  84.  20 3021      4419     4148.8  wm-lh-pericalcarine               91.6741    11.2819    63.0000   116.0000    53.0000 
    85. 

  85.  21 3022      6899     7020.6  wm-lh-postcentral                 91.2081    10.5075    64.0000   118.0000    54.0000 
    86. 

  86.  22 3023      4176     4059.9  wm-lh-posteriorcingulate          97.2921    13.9852    30.0000   125.0000    95.0000 
    87. 

  87.  23 3024     12993    12981.6  wm-lh-precentral                  94.4625     9.9279    61.0000   116.0000    55.0000 
    88. 

  88.  24 3025     10586    10306.6  wm-lh-precuneus                   95.3147    11.3516    41.0000   116.0000    75.0000 
    89. 

  89.  25 3026      2604     2517.6  wm-lh-rostralanteriorcingulate    93.5369    18.1738    18.0000   120.0000   102.0000 
    90. 

  90.  26 3027     12646    12379.6  wm-lh-rostralmiddlefrontal        94.0070    11.9185    56.0000   121.0000    65.0000 
    91. 

  91.  27 3028     17379    17290.1  wm-lh-superiorfrontal             93.6697    10.5534    57.0000   121.0000    64.0000 
    92. 

  92.  28 3029     11731    11630.5  wm-lh-superiorparietal            93.8799    11.0417    63.0000   116.0000    53.0000 
    93. 

  93.  29 3030      7663     7787.2  wm-lh-superiortemporal            91.9351    11.6400    59.0000   116.0000    57.0000 
    94. 

  94.  30 3031      8848     8856.0  wm-lh-supramarginal               95.2158    11.1821    64.0000   119.0000    55.0000 
    95. 

  95.  31 3032       335      336.4  wm-lh-frontalpole                 93.7881    12.2075    67.0000   118.0000    51.0000 
    96. 

  96.  32 3033       764      807.8  wm-lh-temporalpole                70.3927    10.3540    46.0000   101.0000    55.0000 
    97. 

  97.  33 3034      1036     1013.9  wm-lh-transversetemporal          95.2770     8.8856    70.0000   111.0000    41.0000 
    98. 

  98.  34 3035     10138    10119.6  wm-lh-insula                      90.2691    14.6286    31.0000   118.0000    87.0000 
    99. 

  99.  35 4001      3205     3167.0  wm-rh-bankssts                    96.4758     8.8641    65.0000   119.0000    54.0000 
    100. 

  100.  36 4002      3342     3285.4  wm-rh-caudalanteriorcingulate     98.0120    12.7694    23.0000   123.0000   100.0000 
    101. 

  101.  37 4003      5483     5408.5  wm-rh-caudalmiddlefrontal         94.8173    10.9984    62.0000   115.0000    53.0000 
    102. 

  102.  38 4005      3115     3083.4  wm-rh-cuneus                      90.0774    10.9899    62.0000   116.0000    54.0000 
    103. 

  103.  39 4006       769      859.9  wm-rh-entorhinal                  70.8921     9.6884    49.0000    95.0000    46.0000 
    104. 

  104.  40 4007      6720     6621.6  wm-rh-fusiform                    87.8045    12.5285    26.0000   115.0000    89.0000 
    105. 

  105.  41 4008      9344     9399.7  wm-rh-inferiorparietal            90.7156    10.0490    63.0000   112.0000    49.0000 
    106. 

  106.  42 4009      6164     6237.7  wm-rh-inferiortemporal            88.9421    13.6683    52.0000   118.0000    66.0000 
    107. 

  107.  43 4010      3534     3585.4  wm-rh-isthmuscingulate            98.2937    12.1347    24.0000   120.0000    96.0000 
    108. 

  108.  44 4011     11878    11833.9  wm-rh-lateraloccipital            90.8538    11.3131    58.0000   113.0000    55.0000 
    109. 

  109.  45 4012      7443     7330.3  wm-rh-lateralorbitofrontal        91.5171    13.1638    45.0000   115.0000    70.0000 
    110. 

  110.  46 4013      6493     6458.8  wm-rh-lingual                     87.5050    12.4027    24.0000   114.0000    90.0000 
    111. 

  111.  47 4014      3326     3344.7  wm-rh-medialorbitofrontal         92.6978    12.5610    50.0000   114.0000    64.0000 
    112. 

  112.  48 4015      7042     7221.5  wm-rh-middletemporal              91.9110    12.9059    54.0000   119.0000    65.0000 
    113. 

  113.  49 4016      1393     1470.6  wm-rh-parahippocampal             81.0309     9.9181    38.0000   108.0000    70.0000 
    114. 

  114.  50 4017      4357     4344.6  wm-rh-paracentral                 94.4303     9.3781    61.0000   113.0000    52.0000 
    115. 

  115.  51 4018      3267     3262.1  wm-rh-parsopercularis             94.5822    11.4186    53.0000   118.0000    65.0000 
    116. 

  116.  52 4019      1263     1251.4  wm-rh-parsorbitalis               84.6762    11.8420    60.0000   110.0000    50.0000 
    117. 

  117.  53 4020      4076     4036.3  wm-rh-parstriangularis            91.5974    10.3870    59.0000   111.0000    52.0000 
    118. 

  118.  54 4021      4959     4698.5  wm-rh-pericalcarine               89.6923    10.6520    59.0000   118.0000    59.0000 
    119. 

  119.  55 4022      7608     7752.0  wm-rh-postcentral                 90.4636    10.4600    63.0000   116.0000    53.0000 
    120. 

  120.  56 4023      4499     4410.3  wm-rh-posteriorcingulate          99.3990    12.3828    34.0000   124.0000    90.0000 
    121. 

  121.  57 4024     12173    12192.8  wm-rh-precentral                  94.4034     9.4425    64.0000   116.0000    52.0000 
    122. 

  122.  58 4025     10822    10615.6  wm-rh-precuneus                   94.1439    10.2081    46.0000   117.0000    71.0000 
    123. 

  123.  59 4026      2152     2135.8  wm-rh-rostralanteriorcingulate    95.3792    12.2090    59.0000   119.0000    60.0000 
    124. 

  124.  60 4027     13000    12746.6  wm-rh-rostralmiddlefrontal        93.6288    11.2076    63.0000   116.0000    53.0000 
    125. 

  125.  61 4028     16422    16294.5  wm-rh-superiorfrontal             93.7663    10.5047    56.0000   118.0000    62.0000 
    126. 

  126.  62 4029     10400    10360.5  wm-rh-superiorparietal            92.9294    10.7100    61.0000   115.0000    54.0000 
    127. 

  127.  63 4030      7181     7426.0  wm-rh-superiortemporal            91.7828    11.9492    51.0000   120.0000    69.0000 
    128. 

  128.  64 4031      9463     9408.9  wm-rh-supramarginal               95.5069    10.3929    64.0000   117.0000    53.0000 
    129. 

  129.  65 4032       399      419.6  wm-rh-frontalpole                 93.6867    11.1260    69.0000   116.0000    47.0000 
    130. 

  130.  66 4033       714      737.1  wm-rh-temporalpole                66.9370     9.6222    50.0000    95.0000    45.0000 
    131. 

  131.  67 4034       782      767.1  wm-rh-transversetemporal          94.2928     8.6172    70.0000   113.0000    43.0000 
    132. 

  132.  68 4035      9512     9630.8  wm-rh-insula                      90.8792    13.5766    31.0000   118.0000    87.0000 
    133. 

  133.  69 5001     27913    28099.0  Left-UnsegmentedWhiteMatter       98.8014    12.8368    13.0000   127.0000   114.0000 
    134. 

  134.  70 5002     27299    27307.7  Right-UnsegmentedWhiteMatter      98.7331    11.3552    13.0000   124.0000   111.0000 
    135.