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ds000114
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freesurfer-6.0.1
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sub-03
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scripts
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recon-all.env.bak

recon-all.env.bak 3.3 KB
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  1. Sat Jul 25 00:14:24 PDT 2020
    2. 

  2. FREESURFER_HOME /opt/freesurfer
    3. 

  3. Actual FREESURFER_HOME /opt/freesurfer
    4. 

  4. /oak/stanford/groups/russpold/data/openneuro.org/derivatives/ds000114/freesurfer-6.0.1/sub-03
    5. 

  5. setenv SUBJECTS_DIR /oak/stanford/groups/russpold/data/openneuro.org/derivatives/ds000114/freesurfer-6.0.1
    6. 

  6. -autorecon-hemi lh -noparcstats -noparcstats2 -noparcstats3 -nohyporelabel -nobalabels -openmp 8 -subjid sub-03 -sd /oak/stanford/groups/russpold/data/openneuro.org/derivatives/ds000114/freesurfer-6.0.1 -notessellate -nosmooth1 -noinflate1 -noqsphere -nofix -nowhite -nosmooth2 -noinflate2 -nocurvstats -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial -nocortparc2 -nocortparc3 -nopctsurfcon
    7. 

  7. Linux sh02-05n17.int 3.10.0-957.27.2.el7.x86_64 #1 SMP Mon Jul 29 17:46:05 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
    8. 

  8. 

  9. cputime      unlimited
    10. 

  10. filesize     unlimited
    11. 

  11. datasize     unlimited
    12. 

  12. stacksize    8192 kbytes
    13. 

  13. coredumpsize 0 kbytes
    14. 

  14. memoryuse    4194304 kbytes
    15. 

  15. vmemoryuse   unlimited
    16. 

  16. descriptors  131072 
    17. 

  17. memorylocked unlimited
    18. 

  18. maxproc      4096 
    19. 

  19. maxlocks     unlimited
    20. 

  20. maxsignal    1030588 
    21. 

  21. maxmessage   819200 
    22. 

  22. maxnice      0 
    23. 

  23. maxrtprio    0 
    24. 

  24. maxrttime    unlimited
    25. 

  25. 

  26. TEMPLATEFLOW_HOME=/home/users/oesteban/.cache/templateflow
    27. 

  27. POSSUMDIR=/usr/share/fsl/5.0
    28. 

  28. AFNI_TTATLAS_DATASET=/usr/share/afni/atlases
    29. 

  29. AFNI_PLUGINPATH=/usr/lib/afni/plugins
    30. 

  30. MKL_THREADING_LAYER=INTEL
    31. 

  31. LD_LIBRARY_PATH=/usr/lib/fsl/5.0::/.singularity.d/libs
    32. 

  32. HOME=/home/users/oesteban
    33. 

  33. OLDPWD=/home/users/oesteban/fmriprep/ds000114
    34. 

  34. PS1=Singularity> 
    35. 

  35. MINC_LIB_DIR=/opt/freesurfer/mni/lib
    36. 

  36. FS_LICENSE=/home/users/oesteban/.freesurfer.txt
    37. 

  37. FREESURFER_HOME=/opt/freesurfer
    38. 

  38. MINC_BIN_DIR=/opt/freesurfer/mni/bin
    39. 

  39. FSLDIR=/usr/share/fsl/5.0
    40. 

  40. AFNI_IMSAVE_WARNINGS=NO
    41. 

  41. PYTHONNOUSERSITE=1
    42. 

  42. ANTSPATH=/usr/lib/ants
    43. 

  43. FUNCTIONALS_DIR=/opt/freesurfer/sessions
    44. 

  44. FSLMULTIFILEQUIT=TRUE
    45. 

  45. FSLTCLSH=/usr/bin/tclsh
    46. 

  46. NO_ET=1
    47. 

  47. ANTS_RANDOM_SEED=38077
    48. 

  48. TERM=xterm-256color
    49. 

  49. PATH=/usr/local/miniconda/bin:/opt/ICA-AROMA:/usr/lib/ants:/usr/lib/fsl/5.0:/usr/lib/afni/bin:/opt/freesurfer/bin:/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
    50. 

  50. OS=Linux
    51. 

  51. PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.5
    52. 

  52. MNI_DIR=/opt/freesurfer/mni
    53. 

  53. FSLOUTPUTTYPE=NIFTI_GZ
    54. 

  54. KMP_INIT_AT_FORK=FALSE
    55. 

  55. LANG=C
    56. 

  56. MNI_PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.5
    57. 

  57. AFNI_MODELPATH=/usr/lib/afni/models
    58. 

  58. LOCAL_DIR=/opt/freesurfer/local
    59. 

  59. AROMA_VERSION=0.4.5
    60. 

  60. FS_OVERRIDE=0
    61. 

  61. FSLWISH=/usr/bin/wish
    62. 

  62. IS_DOCKER_8395080871=1
    63. 

  63. SINGULARITY_APPNAME=
    64. 

  64. PROMPT_COMMAND=PS1="Singularity> "; unset PROMPT_COMMAND
    65. 

  65. FSL_DIR=/usr/share/fsl/5.0
    66. 

  66. FSF_OUTPUT_FORMAT=nii.gz
    67. 

  67. SINGULARITY_CONTAINER=/home/groups/russpold/singularity_images/poldracklab_fmriprep_compcor-revision-2130-2020-07-23-0a9cb9ff47f9.simg
    68. 

  68. MNI_DATAPATH=/opt/freesurfer/mni/data
    69. 

  69. PWD=/oak/stanford/groups/russpold/data/openneuro.org/derivatives/ds000114/freesurfer-6.0.1/sub-03
    70. 

  70. LC_ALL=C.UTF-8
    71. 

  71. NIPYPE_NO_ET=1
    72. 

  72. SUBJECTS_DIR=/oak/stanford/groups/russpold/data/openneuro.org/derivatives/ds000114/freesurfer-6.0.1
    73. 

  73. MKL_NUM_THREADS=1
    74. 

  74. OMP_NUM_THREADS=8
    75. 

  75. SINGULARITY_NAME=poldracklab_fmriprep_compcor-revision-2130-2020-07-23-0a9cb9ff47f9.simg
    76. 

  76. CPATH=/usr/local/miniconda/include/:
    77. 

  77. FIX_VERTEX_AREA=
    78. 

  78. HOSTTYPE=x86_64-linux
    79. 

  79. VENDOR=unknown
    80. 

  80. OSTYPE=linux
    81. 

  81. MACHTYPE=x86_64
    82. 

  82. SHLVL=1
    83. 

  83. LOGNAME=oesteban
    84. 

  84. USER=oesteban
    85. 

  85. GROUP=russpold
    86. 

  86. HOST=sh02-05n17.int
    87. 

  87. ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS=1
    88. 

  88. FS_OMP_NUM_THREADS=8
    89. 

  89. REQUIRE_FS_MATCH=0
    90.