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stats
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aseg.stats

aseg.stats 9.6 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/freesurfer/ASegStatsLUT.txt --subject sub-10 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname nid00784
    8. 

  8. # machine  x86_64
    9. 

  9. # user     oesteban
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /corral-repl/utexas/poldracklab/data/OpenNeuro/ds000114/derivatives/freesurfer-6.0.1
    13. 

  13. # subjectname sub-10
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 913214.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 892245.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 891879.294712, mm^3
    17. 

  17. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 18026.000000, mm^3
    18. 

  18. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 177989.014851, mm^3
    19. 

  19. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 176358.218806, mm^3
    20. 

  20. # Measure Cortex, CortexVol, Total cortical gray matter volume, 354347.233658, mm^3
    21. 

  21. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 193066.957826, mm^3
    22. 

  22. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 190428.103228, mm^3
    23. 

  23. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 383495.061054, mm^3
    24. 

  24. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 42543.000000, mm^3
    25. 

  25. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 486330.233658, mm^3
    26. 

  26. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 799572.294712, mm^3
    27. 

  27. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 781546.294712, mm^3
    28. 

  28. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 780687.000000, mm^3
    29. 

  29. # Measure Mask, MaskVol, Mask Volume, 1180661.000000, mm^3
    30. 

  30. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.775363, unitless
    31. 

  31. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.002438, unitless
    32. 

  32. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 6, unitless
    33. 

  33. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 10, unitless
    34. 

  34. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 16, unitless
    35. 

  35. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1177789.072125, mm^3
    36. 

  36. # SegVolFile mri/aseg.mgz 
    37. 

  37. # SegVolFileTimeStamp  2019/10/16 20:34:36 
    38. 

  38. # ColorTable /opt/freesurfer/ASegStatsLUT.txt 
    39. 

  39. # ColorTableTimeStamp 2017/10/20 18:17:30 
    40. 

  40. # InVolFile  mri/norm.mgz 
    41. 

  41. # InVolFileTimeStamp  2019/10/16 17:26:08 
    42. 

  42. # InVolFrame 0 
    43. 

  43. # PVVolFile  mri/norm.mgz 
    44. 

  44. # PVVolFileTimeStamp  2019/10/16 17:26:08 
    45. 

  45. # Excluding Cortical Gray and White Matter
    46. 

  46. # ExcludeSegId 0 2 3 41 42 
    47. 

  47. # VoxelVolume_mm3 1 
    48. 

  48. # TableCol  1 ColHeader Index 
    49. 

  49. # TableCol  1 FieldName Index 
    50. 

  50. # TableCol  1 Units     NA 
    51. 

  51. # TableCol  2 ColHeader SegId 
    52. 

  52. # TableCol  2 FieldName Segmentation Id
    53. 

  53. # TableCol  2 Units     NA
    54. 

  54. # TableCol  3 ColHeader NVoxels 
    55. 

  55. # TableCol  3 FieldName Number of Voxels
    56. 

  56. # TableCol  3 Units     unitless
    57. 

  57. # TableCol  4 ColHeader Volume_mm3
    58. 

  58. # TableCol  4 FieldName Volume
    59. 

  59. # TableCol  4 Units     mm^3
    60. 

  60. # TableCol  5 ColHeader StructName
    61. 

  61. # TableCol  5 FieldName Structure Name
    62. 

  62. # TableCol  5 Units     NA
    63. 

  63. # TableCol  6 ColHeader normMean 
    64. 

  64. # TableCol  6 FieldName Intensity normMean
    65. 

  65. # TableCol  6 Units     MR
    66. 

  66. # TableCol  7 ColHeader normStdDev
    67. 

  67. # TableCol  7 FieldName Itensity normStdDev
    68. 

  68. # TableCol  7 Units     MR
    69. 

  69. # TableCol  8 ColHeader normMin
    70. 

  70. # TableCol  8 FieldName Intensity normMin
    71. 

  71. # TableCol  8 Units     MR
    72. 

  72. # TableCol  9 ColHeader normMax
    73. 

  73. # TableCol  9 FieldName Intensity normMax
    74. 

  74. # TableCol  9 Units     MR
    75. 

  75. # TableCol 10 ColHeader normRange
    76. 

  76. # TableCol 10 FieldName Intensity normRange
    77. 

  77. # TableCol 10 Units     MR
    78. 

  78. # NRows 45 
    79. 

  79. # NTableCols 10 
    80. 

  80. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    81. 

  81.   1   4      8805     9060.3  Left-Lateral-Ventricle            13.7735    12.7417     0.0000    82.0000    82.0000 
    82. 

  82.   2   5       271      271.6  Left-Inf-Lat-Vent                 38.1734    13.9797     4.0000    72.0000    68.0000 
    83. 

  83.   3   7     11437    12083.0  Left-Cerebellum-White-Matter      82.5046     7.0432    21.0000   102.0000    81.0000 
    84. 

  84.   4   8     44852    45202.8  Left-Cerebellum-Cortex            52.7223     9.3388     4.0000    85.0000    81.0000 
    85. 

  85.   5  10      5434     5162.1  Left-Thalamus-Proper              74.3174    11.5305    22.0000   103.0000    81.0000 
    86. 

  86.   6  11      2569     2513.5  Left-Caudate                      61.8856    10.4793    23.0000    88.0000    65.0000 
    87. 

  87.   7  12      4069     4043.8  Left-Putamen                      72.0504     8.5967    46.0000    99.0000    53.0000 
    88. 

  88.   8  13      1419     1379.0  Left-Pallidum                     95.9302     5.5827    74.0000   110.0000    36.0000 
    89. 

  89.   9  14       708      748.0  3rd-Ventricle                     24.2924    14.8804     1.0000    74.0000    73.0000 
    90. 

  90.  10  15      1459     1527.4  4th-Ventricle                     16.6655    12.9713     0.0000    66.0000    66.0000 
    91. 

  91.  11  16     17994    18279.8  Brain-Stem                        74.3347    10.1667     6.0000   108.0000   102.0000 
    92. 

  92.  12  17      3230     3112.7  Left-Hippocampus                  49.9855     9.4003     6.0000    87.0000    81.0000 
    93. 

  93.  13  18      1041      995.4  Left-Amygdala                     52.9452     7.9096    25.0000    76.0000    51.0000 
    94. 

  94.  14  24       776      796.6  CSF                               25.9330    13.4100     1.0000    57.0000    56.0000 
    95. 

  95.  15  26       553      518.3  Left-Accumbens-area               55.2260     7.3656    30.0000    81.0000    51.0000 
    96. 

  96.  16  28      2932     2810.4  Left-VentralDC                    85.0171    11.7868    14.0000   113.0000    99.0000 
    97. 

  97.  17  30        12       18.6  Left-vessel                       55.5000     6.4031    44.0000    67.0000    23.0000 
    98. 

  98.  18  31       608      536.1  Left-choroid-plexus               48.9507    14.3169    14.0000    87.0000    73.0000 
    99. 

  99.  19  43      7512     7772.4  Right-Lateral-Ventricle           14.9975    13.3024     0.0000    75.0000    75.0000 
    100. 

  100.  20  44       306      327.7  Right-Inf-Lat-Vent                26.6307    14.1846     4.0000    74.0000    70.0000 
    101. 

  101.  21  46     10599    11312.1  Right-Cerebellum-White-Matter     84.5195     6.6774    34.0000   102.0000    68.0000 
    102. 

  102.  22  47     44504    44928.9  Right-Cerebellum-Cortex           52.7954     9.9089     4.0000    91.0000    87.0000 
    103. 

  103.  23  49      5575     5268.3  Right-Thalamus-Proper             73.7690    11.5301    22.0000   102.0000    80.0000 
    104. 

  104.  24  50      2640     2558.5  Right-Caudate                     58.2152    11.0853    22.0000    87.0000    65.0000 
    105. 

  105.  25  51      4163     4074.5  Right-Putamen                     72.5986     8.7950    47.0000    94.0000    47.0000 
    106. 

  106.  26  52      1321     1281.6  Right-Pallidum                    96.4186     5.1224    63.0000   109.0000    46.0000 
    107. 

  107.  27  53      3241     3130.2  Right-Hippocampus                 52.0873     9.5398    10.0000    85.0000    75.0000 
    108. 

  108.  28  54      1017      976.7  Right-Amygdala                    51.7060     8.3297    23.0000    81.0000    58.0000 
    109. 

  109.  29  58       452      416.9  Right-Accumbens-area              56.1372     7.7430    34.0000    79.0000    45.0000 
    110. 

  110.  30  60      2923     2756.2  Right-VentralDC                   83.5036    12.6238    38.0000   111.0000    73.0000 
    111. 

  111.  31  62         6       12.2  Right-vessel                      54.0000     5.6214    47.0000    62.0000    15.0000 
    112. 

  112.  32  63       524      444.3  Right-choroid-plexus              45.5916    14.1637    14.0000    87.0000    73.0000 
    113. 

  113.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    114. 

  114.  34  77      1513     1232.9  WM-hypointensities                65.5882    12.9788    30.0000    96.0000    66.0000 
    115. 

  115.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    117. 

  117.  37  80         0        0.0  non-WM-hypointensities             0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    120. 

  120.  40  85        88      103.1  Optic-Chiasm                      59.6477    18.5404    12.0000   105.0000    93.0000 
    121. 

  121.  41 251      1021      959.9  CC_Posterior                      98.4740    15.5675    38.0000   117.0000    79.0000 
    122. 

  122.  42 252       625      565.0  CC_Mid_Posterior                  84.6800    21.3728    20.0000   114.0000    94.0000 
    123. 

  123.  43 253       465      441.8  CC_Central                        94.3957    17.0670    40.0000   114.0000    74.0000 
    124. 

  124.  44 254       538      490.5  CC_Mid_Anterior                   92.9814    17.4201    31.0000   114.0000    83.0000 
    125. 

  125.  45 255       767      772.4  CC_Anterior                      102.3116    11.7754    32.0000   117.0000    85.0000 
    126.