mri_nu_correct.mni.log.bak 4.6 KB

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  1. /corral-repl/utexas/poldracklab/data/OpenNeuro/ds000114/derivatives/freesurfer-6.0.1/sub-10/mri
  2. /opt/freesurfer/bin/mri_nu_correct.mni
  3. --no-rescale --i orig.mgz --o orig_nu.mgz --n 1 --proto-iters 1000 --distance 50
  4. nIters 1
  5. $Id: mri_nu_correct.mni,v 1.27 2016/02/26 16:19:49 mreuter Exp $
  6. Linux nid00780 4.4.103-6.38_4.0.95-cray_ari_c #1 SMP Fri Feb 9 17:52:44 UTC 2018 (172b90b) x86_64 x86_64 x86_64 GNU/Linux
  7. Wed Oct 16 15:51:53 UTC 2019
  8. Program nu_correct, built from:
  9. Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34
  10. tmpdir is ./tmp.mri_nu_correct.mni.19475
  11. /corral-repl/utexas/poldracklab/data/OpenNeuro/ds000114/derivatives/freesurfer-6.0.1/sub-10/mri
  12. mri_convert orig.mgz ./tmp.mri_nu_correct.mni.19475/nu0.mnc -odt float
  13. mri_convert.bin orig.mgz ./tmp.mri_nu_correct.mni.19475/nu0.mnc -odt float
  14. $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
  15. reading from orig.mgz...
  16. TR=9.68, TE=0.00, TI=0.00, flip angle=0.00
  17. i_ras = (-1, -2.09548e-09, 0)
  18. j_ras = (0, 0, -1)
  19. k_ras = (2.32831e-10, 1, 0)
  20. changing data type from uchar to float (noscale = 0)...
  21. writing to ./tmp.mri_nu_correct.mni.19475/nu0.mnc...
  22. --------------------------------------------------------
  23. Iteration 1 Wed Oct 16 15:51:54 UTC 2019
  24. nu_correct -clobber ./tmp.mri_nu_correct.mni.19475/nu0.mnc ./tmp.mri_nu_correct.mni.19475/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.19475/0/ -iterations 1000 -distance 50
  25. [oesteban@nid00780:/corral-repl/utexas/poldracklab/data/OpenNeuro/ds000114/derivatives/freesurfer-6.0.1/sub-10/mri/] [2019-10-16 15:51:54] running:
  26. /opt/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 1000 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 50 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.19475/0/ ./tmp.mri_nu_correct.mni.19475/nu0.mnc ./tmp.mri_nu_correct.mni.19475/nu1.imp
  27. Processing:.................................................................Done
  28. Processing:.................................................................Done
  29. Processing:.................................................................Done
  30. Processing:.................................................................Done
  31. Processing:.................................................................Done
  32. Processing:.................................................................Done
  33. Processing:.................................................................Done
  34. Processing:.................................................................Done
  35. Processing:.................................................................Done
  36. Processing:.................................................................Done
  37. Processing:.................................................................Done
  38. Processing:.................................................................Done
  39. Processing:.................................................................Done
  40. Processing:.................................................................Done
  41. Processing:.................................................................Done
  42. Processing:.................................................................Done
  43. Processing:.................................................................Done
  44. Processing:.................................................................Done
  45. Processing:.................................................................Done
  46. Processing:.................................................................Done
  47. Processing:.................................................................Done
  48. Processing:.................................................................Done
  49. Processing:.................................................................Done
  50. Processing:.................................................................Done
  51. Processing:.................................................................Done
  52. Number of iterations: 25
  53. CV of field change: 0.000973579
  54. mri_convert ./tmp.mri_nu_correct.mni.19475/nu1.mnc orig_nu.mgz --like orig.mgz --conform
  55. mri_convert.bin ./tmp.mri_nu_correct.mni.19475/nu1.mnc orig_nu.mgz --like orig.mgz --conform
  56. $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
  57. reading from ./tmp.mri_nu_correct.mni.19475/nu1.mnc...
  58. TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
  59. i_ras = (-1, -2.09548e-09, 0)
  60. j_ras = (0, 0, -1)
  61. k_ras = (2.32831e-10, 1, 0)
  62. INFO: transform src into the like-volume: orig.mgz
  63. changing data type from float to uchar (noscale = 0)...
  64. MRIchangeType: Building histogram
  65. writing to orig_nu.mgz...
  66. Wed Oct 16 15:52:42 UTC 2019
  67. mri_nu_correct.mni done