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ds000114
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freesurfer-6.0.1
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sub-07
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stats
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wmparc.stats

wmparc.stats 11 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject sub-07 --surf-wm-vol --ctab /opt/freesurfer/WMParcStatsLUT.txt --etiv 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname nid00777
    8. 

  8. # machine  x86_64
    9. 

  9. # user     oesteban
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /corral-repl/utexas/poldracklab/data/OpenNeuro/ds000114/derivatives/freesurfer-6.0.1
    13. 

  13. # subjectname sub-07
    14. 

  14. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 9869.000000, mm^3
    15. 

  15. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 215982.808984, mm^3
    16. 

  16. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 216638.673439, mm^3
    17. 

  17. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 432621.482423, mm^3
    18. 

  18. # Measure Mask, MaskVol, Mask Volume, 1264653.000000, mm^3
    19. 

  19. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1254743.811023, mm^3
    20. 

  20. # SegVolFile mri/wmparc.mgz 
    21. 

  21. # SegVolFileTimeStamp  2019/10/16 21:08:06 
    22. 

  22. # ColorTable /opt/freesurfer/WMParcStatsLUT.txt 
    23. 

  23. # ColorTableTimeStamp 2017/10/20 18:17:30 
    24. 

  24. # InVolFile  mri/norm.mgz 
    25. 

  25. # InVolFileTimeStamp  2019/10/16 17:26:23 
    26. 

  26. # InVolFrame 0 
    27. 

  27. # PVVolFile  mri/norm.mgz 
    28. 

  28. # PVVolFileTimeStamp  2019/10/16 17:26:23 
    29. 

  29. # ExcludeSegId 0 
    30. 

  30. # Only reporting non-empty segmentations
    31. 

  31. # VoxelVolume_mm3 1 
    32. 

  32. # TableCol  1 ColHeader Index 
    33. 

  33. # TableCol  1 FieldName Index 
    34. 

  34. # TableCol  1 Units     NA 
    35. 

  35. # TableCol  2 ColHeader SegId 
    36. 

  36. # TableCol  2 FieldName Segmentation Id
    37. 

  37. # TableCol  2 Units     NA
    38. 

  38. # TableCol  3 ColHeader NVoxels 
    39. 

  39. # TableCol  3 FieldName Number of Voxels
    40. 

  40. # TableCol  3 Units     unitless
    41. 

  41. # TableCol  4 ColHeader Volume_mm3
    42. 

  42. # TableCol  4 FieldName Volume
    43. 

  43. # TableCol  4 Units     mm^3
    44. 

  44. # TableCol  5 ColHeader StructName
    45. 

  45. # TableCol  5 FieldName Structure Name
    46. 

  46. # TableCol  5 Units     NA
    47. 

  47. # TableCol  6 ColHeader normMean 
    48. 

  48. # TableCol  6 FieldName Intensity normMean
    49. 

  49. # TableCol  6 Units     MR
    50. 

  50. # TableCol  7 ColHeader normStdDev
    51. 

  51. # TableCol  7 FieldName Itensity normStdDev
    52. 

  52. # TableCol  7 Units     MR
    53. 

  53. # TableCol  8 ColHeader normMin
    54. 

  54. # TableCol  8 FieldName Intensity normMin
    55. 

  55. # TableCol  8 Units     MR
    56. 

  56. # TableCol  9 ColHeader normMax
    57. 

  57. # TableCol  9 FieldName Intensity normMax
    58. 

  58. # TableCol  9 Units     MR
    59. 

  59. # TableCol 10 ColHeader normRange
    60. 

  60. # TableCol 10 FieldName Intensity normRange
    61. 

  61. # TableCol 10 Units     MR
    62. 

  62. # NRows 70 
    63. 

  63. # NTableCols 10 
    64. 

  64. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    65. 

  65.   1 3001      3079     2981.3  wm-lh-bankssts                    97.8668     9.3295    67.0000   114.0000    47.0000 
    66. 

  66.   2 3002      2284     2270.7  wm-lh-caudalanteriorcingulate     99.1668     9.6729    60.0000   117.0000    57.0000 
    67. 

  67.   3 3003      5876     5769.0  wm-lh-caudalmiddlefrontal         95.9557     9.9175    64.0000   113.0000    49.0000 
    68. 

  68.   4 3005      3284     3137.2  wm-lh-cuneus                      89.0475    11.2443    63.0000   113.0000    50.0000 
    69. 

  69.   5 3006       972     1015.0  wm-lh-entorhinal                  75.5453     9.6473    50.0000    97.0000    47.0000 
    70. 

  70.   6 3007      7346     7167.5  wm-lh-fusiform                    89.5531    12.8170    34.0000   116.0000    82.0000 
    71. 

  71.   7 3008      7427     7360.0  wm-lh-inferiorparietal            96.3687    10.5662    67.0000   114.0000    47.0000 
    72. 

  72.   8 3009      7146     7034.1  wm-lh-inferiortemporal            92.0781    12.0049    58.0000   116.0000    58.0000 
    73. 

  73.   9 3010      3185     3254.8  wm-lh-isthmuscingulate           101.0179     9.2695    48.0000   117.0000    69.0000 
    74. 

  74.  10 3011      9981    10000.0  wm-lh-lateraloccipital            92.5690    10.9131    61.0000   118.0000    57.0000 
    75. 

  75.  11 3012      6513     6322.3  wm-lh-lateralorbitofrontal        90.1082    12.1893    50.0000   115.0000    65.0000 
    76. 

  76.  12 3013      5474     5421.4  wm-lh-lingual                     86.8813    12.1229    19.0000   118.0000    99.0000 
    77. 

  77.  13 3014      3807     3708.4  wm-lh-medialorbitofrontal         88.0641    13.6817    25.0000   114.0000    89.0000 
    78. 

  78.  14 3015      4571     4684.1  wm-lh-middletemporal              92.3299    11.3142    62.0000   118.0000    56.0000 
    79. 

  79.  15 3016      1560     1631.0  wm-lh-parahippocampal             85.4455     9.7837    61.0000   108.0000    47.0000 
    80. 

  80.  16 3017      3648     3588.8  wm-lh-paracentral                 93.8695     9.6128    63.0000   113.0000    50.0000 
    81. 

  81.  17 3018      2963     2889.6  wm-lh-parsopercularis             91.8883    11.7791    60.0000   115.0000    55.0000 
    82. 

  82.  18 3019      1096     1100.1  wm-lh-parsorbitalis               90.4973    11.7587    62.0000   114.0000    52.0000 
    83. 

  83.  19 3020      3259     3174.0  wm-lh-parstriangularis            92.4615    10.8869    61.0000   111.0000    50.0000 
    84. 

  84.  20 3021      3513     3227.4  wm-lh-pericalcarine               84.1904    13.0454     8.0000   113.0000   105.0000 
    85. 

  85.  21 3022      7105     7097.3  wm-lh-postcentral                 90.4258    10.3834    59.0000   116.0000    57.0000 
    86. 

  86.  22 3023      3949     3950.3  wm-lh-posteriorcingulate         101.3094     9.5690    43.0000   118.0000    75.0000 
    87. 

  87.  23 3024     10710    10678.6  wm-lh-precentral                  94.4842     8.9973    63.0000   113.0000    50.0000 
    88. 

  88.  24 3025      7457     7349.5  wm-lh-precuneus                   96.7360    11.3204    21.0000   121.0000   100.0000 
    89. 

  89.  25 3026      2333     2219.5  wm-lh-rostralanteriorcingulate    93.3648    11.6418    31.0000   112.0000    81.0000 
    90. 

  90.  26 3027     11612    11364.3  wm-lh-rostralmiddlefrontal        93.9447    11.6639    61.0000   120.0000    59.0000 
    91. 

  91.  27 3028     17787    17450.2  wm-lh-superiorfrontal             92.8920    10.5326    61.0000   127.0000    66.0000 
    92. 

  92.  28 3029     11328    11145.3  wm-lh-superiorparietal            94.5995    10.5225    34.0000   117.0000    83.0000 
    93. 

  93.  29 3030      7089     7142.5  wm-lh-superiortemporal            93.3299    11.1980    64.0000   116.0000    52.0000 
    94. 

  94.  30 3031      8030     7934.0  wm-lh-supramarginal               96.3371    10.8645    66.0000   114.0000    48.0000 
    95. 

  95.  31 3032       398      390.6  wm-lh-frontalpole                 93.5402    10.6901    68.0000   116.0000    48.0000 
    96. 

  96.  32 3033       834      850.8  wm-lh-temporalpole                79.1487    11.4149    55.0000   110.0000    55.0000 
    97. 

  97.  33 3034       790      760.8  wm-lh-transversetemporal          94.2405    11.3645    68.0000   115.0000    47.0000 
    98. 

  98.  34 3035      8932     8867.8  wm-lh-insula                      90.9445    14.0257    49.0000   117.0000    68.0000 
    99. 

  99.  35 4001      2334     2236.0  wm-rh-bankssts                    95.3252     9.0669    69.0000   110.0000    41.0000 
    100. 

  100.  36 4002      2648     2564.9  wm-rh-caudalanteriorcingulate     98.6156     9.9370    51.0000   116.0000    65.0000 
    101. 

  101.  37 4003      5707     5568.6  wm-rh-caudalmiddlefrontal         93.9275    10.5370    63.0000   112.0000    49.0000 
    102. 

  102.  38 4005      2767     2678.2  wm-rh-cuneus                      90.9472    10.9099    65.0000   113.0000    48.0000 
    103. 

  103.  39 4006       965     1020.2  wm-rh-entorhinal                  76.0995     9.7230    54.0000    94.0000    40.0000 
    104. 

  104.  40 4007      6427     6310.1  wm-rh-fusiform                    88.6941    11.3544    52.0000   113.0000    61.0000 
    105. 

  105.  41 4008     10167    10097.4  wm-rh-inferiorparietal            92.4411     9.7001    64.0000   110.0000    46.0000 
    106. 

  106.  42 4009      6530     6502.3  wm-rh-inferiortemporal            90.4735    11.6935    56.0000   115.0000    59.0000 
    107. 

  107.  43 4010      3052     3038.5  wm-rh-isthmuscingulate            99.0934     9.6950    51.0000   119.0000    68.0000 
    108. 

  108.  44 4011      9783     9766.1  wm-rh-lateraloccipital            91.3555     9.7300    62.0000   114.0000    52.0000 
    109. 

  109.  45 4012      7238     7076.7  wm-rh-lateralorbitofrontal        91.7900    12.4687    44.0000   116.0000    72.0000 
    110. 

  110.  46 4013      6020     5847.4  wm-rh-lingual                     88.1091    11.4824    35.0000   114.0000    79.0000 
    111. 

  111.  47 4014      3775     3718.3  wm-rh-medialorbitofrontal         92.3534    12.3163    32.0000   116.0000    84.0000 
    112. 

  112.  48 4015      5325     5473.0  wm-rh-middletemporal              93.4252    11.3426    61.0000   122.0000    61.0000 
    113. 

  113.  49 4016      1477     1517.0  wm-rh-parahippocampal             87.0955     9.9721    57.0000   108.0000    51.0000 
    114. 

  114.  50 4017      4774     4716.7  wm-rh-paracentral                 96.2801     8.4883    67.0000   114.0000    47.0000 
    115. 

  115.  51 4018      3238     3189.7  wm-rh-parsopercularis             93.1884    11.9248    62.0000   114.0000    52.0000 
    116. 

  116.  52 4019      1269     1279.5  wm-rh-parsorbitalis               86.7179    11.3135    63.0000   112.0000    49.0000 
    117. 

  117.  53 4020      3924     3776.2  wm-rh-parstriangularis            90.7240    10.9933    63.0000   112.0000    49.0000 
    118. 

  118.  54 4021      4496     4196.0  wm-rh-pericalcarine               89.0080    10.7534    26.0000   110.0000    84.0000 
    119. 

  119.  55 4022      6893     6813.1  wm-rh-postcentral                 88.6581    10.7372    63.0000   113.0000    50.0000 
    120. 

  120.  56 4023      3640     3622.9  wm-rh-posteriorcingulate          99.4247    10.5347    57.0000   117.0000    60.0000 
    121. 

  121.  57 4024     12097    11804.4  wm-rh-precentral                  91.9573     9.7250    62.0000   113.0000    51.0000 
    122. 

  122.  58 4025      7100     6958.3  wm-rh-precuneus                   93.8566     9.8533    64.0000   113.0000    49.0000 
    123. 

  123.  59 4026      1557     1507.1  wm-rh-rostralanteriorcingulate    91.8054    11.7731    64.0000   112.0000    48.0000 
    124. 

  124.  60 4027     12379    12088.9  wm-rh-rostralmiddlefrontal        94.0154    11.5365    60.0000   121.0000    61.0000 
    125. 

  125.  61 4028     16048    15720.6  wm-rh-superiorfrontal             92.0850    10.4600    60.0000   118.0000    58.0000 
    126. 

  126.  62 4029     10792    10608.6  wm-rh-superiorparietal            91.9242     9.9394    63.0000   110.0000    47.0000 
    127. 

  127.  63 4030      6356     6537.9  wm-rh-superiortemporal            92.8221     9.9841    61.0000   111.0000    50.0000 
    128. 

  128.  64 4031      8457     8315.1  wm-rh-supramarginal               94.2676    10.3271    65.0000   114.0000    49.0000 
    129. 

  129.  65 4032       405      416.0  wm-rh-frontalpole                 93.7407    11.4511    70.0000   121.0000    51.0000 
    130. 

  130.  66 4033       692      717.9  wm-rh-temporalpole                78.3136    10.6271    58.0000   103.0000    45.0000 
    131. 

  131.  67 4034       604      571.2  wm-rh-transversetemporal          90.8079    10.3771    68.0000   111.0000    43.0000 
    132. 

  132.  68 4035      8614     8539.6  wm-rh-insula                      90.8235    13.8381    51.0000   114.0000    63.0000 
    133. 

  133.  69 5001     29130    29319.0  Left-UnsegmentedWhiteMatter       99.0317    11.3061    22.0000   124.0000   102.0000 
    134. 

  134.  70 5002     27391    27514.6  Right-UnsegmentedWhiteMatter      98.8885     9.3031    31.0000   123.0000    92.0000 
    135.