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stats
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aseg.stats

aseg.stats 9.6 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/freesurfer/ASegStatsLUT.txt --subject sub-05 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname nid00779
    8. 

  8. # machine  x86_64
    9. 

  9. # user     oesteban
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /corral-repl/utexas/poldracklab/data/OpenNeuro/ds000114/derivatives/freesurfer-6.0.1
    13. 

  13. # subjectname sub-05
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1243754.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1203974.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1203538.734600, mm^3
    17. 

  17. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 33868.000000, mm^3
    18. 

  18. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 233802.701758, mm^3
    19. 

  19. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 240396.153627, mm^3
    20. 

  20. # Measure Cortex, CortexVol, Total cortical gray matter volume, 474198.855385, mm^3
    21. 

  21. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 267611.401211, mm^3
    22. 

  22. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 264838.478004, mm^3
    23. 

  23. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 532449.879215, mm^3
    24. 

  24. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 54734.000000, mm^3
    25. 

  25. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 645368.855385, mm^3
    26. 

  26. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1096365.734600, mm^3
    27. 

  27. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1062497.734600, mm^3
    28. 

  28. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1061648.000000, mm^3
    29. 

  29. # Measure Mask, MaskVol, Mask Volume, 1666364.000000, mm^3
    30. 

  30. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.720194, unitless
    31. 

  31. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 0.964906, unitless
    32. 

  32. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 11, unitless
    33. 

  33. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 6, unitless
    34. 

  34. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 17, unitless
    35. 

  35. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1726969.647695, mm^3
    36. 

  36. # SegVolFile mri/aseg.mgz 
    37. 

  37. # SegVolFileTimeStamp  2019/10/16 21:27:16 
    38. 

  38. # ColorTable /opt/freesurfer/ASegStatsLUT.txt 
    39. 

  39. # ColorTableTimeStamp 2017/10/20 18:17:30 
    40. 

  40. # InVolFile  mri/norm.mgz 
    41. 

  41. # InVolFileTimeStamp  2019/10/16 17:25:40 
    42. 

  42. # InVolFrame 0 
    43. 

  43. # PVVolFile  mri/norm.mgz 
    44. 

  44. # PVVolFileTimeStamp  2019/10/16 17:25:40 
    45. 

  45. # Excluding Cortical Gray and White Matter
    46. 

  46. # ExcludeSegId 0 2 3 41 42 
    47. 

  47. # VoxelVolume_mm3 1 
    48. 

  48. # TableCol  1 ColHeader Index 
    49. 

  49. # TableCol  1 FieldName Index 
    50. 

  50. # TableCol  1 Units     NA 
    51. 

  51. # TableCol  2 ColHeader SegId 
    52. 

  52. # TableCol  2 FieldName Segmentation Id
    53. 

  53. # TableCol  2 Units     NA
    54. 

  54. # TableCol  3 ColHeader NVoxels 
    55. 

  55. # TableCol  3 FieldName Number of Voxels
    56. 

  56. # TableCol  3 Units     unitless
    57. 

  57. # TableCol  4 ColHeader Volume_mm3
    58. 

  58. # TableCol  4 FieldName Volume
    59. 

  59. # TableCol  4 Units     mm^3
    60. 

  60. # TableCol  5 ColHeader StructName
    61. 

  61. # TableCol  5 FieldName Structure Name
    62. 

  62. # TableCol  5 Units     NA
    63. 

  63. # TableCol  6 ColHeader normMean 
    64. 

  64. # TableCol  6 FieldName Intensity normMean
    65. 

  65. # TableCol  6 Units     MR
    66. 

  66. # TableCol  7 ColHeader normStdDev
    67. 

  67. # TableCol  7 FieldName Itensity normStdDev
    68. 

  68. # TableCol  7 Units     MR
    69. 

  69. # TableCol  8 ColHeader normMin
    70. 

  70. # TableCol  8 FieldName Intensity normMin
    71. 

  71. # TableCol  8 Units     MR
    72. 

  72. # TableCol  9 ColHeader normMax
    73. 

  73. # TableCol  9 FieldName Intensity normMax
    74. 

  74. # TableCol  9 Units     MR
    75. 

  75. # TableCol 10 ColHeader normRange
    76. 

  76. # TableCol 10 FieldName Intensity normRange
    77. 

  77. # TableCol 10 Units     MR
    78. 

  78. # NRows 45 
    79. 

  79. # NTableCols 10 
    80. 

  80. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    81. 

  81.   1   4     15661    15969.9  Left-Lateral-Ventricle            11.0421    11.4783     0.0000    79.0000    79.0000 
    82. 

  82.   2   5       537      598.6  Left-Inf-Lat-Vent                 31.2011    13.4692     6.0000    78.0000    72.0000 
    83. 

  83.   3   7     12964    13774.0  Left-Cerebellum-White-Matter      83.7906     7.2948    27.0000   100.0000    73.0000 
    84. 

  84.   4   8     58461    59168.2  Left-Cerebellum-Cortex            49.5313    12.7814     1.0000    92.0000    91.0000 
    85. 

  85.   5  10      6645     6354.2  Left-Thalamus-Proper              76.2349    12.3837    21.0000   105.0000    84.0000 
    86. 

  86.   6  11      3800     3794.4  Left-Caudate                      58.8879     9.9295    24.0000    90.0000    66.0000 
    87. 

  87.   7  12      5179     5069.7  Left-Putamen                      70.9521     9.4399    33.0000    98.0000    65.0000 
    88. 

  88.   8  13      2069     2034.4  Left-Pallidum                     99.6288     6.4475    52.0000   118.0000    66.0000 
    89. 

  89.   9  14      1824     1822.4  3rd-Ventricle                     18.0713    14.7600     0.0000    73.0000    73.0000 
    90. 

  90.  10  15      2833     2980.6  4th-Ventricle                     14.7444    11.7150     0.0000    72.0000    72.0000 
    91. 

  91.  11  16     22161    22691.7  Brain-Stem                        74.0144    10.9584     4.0000   107.0000   103.0000 
    92. 

  92.  12  17      4188     4051.7  Left-Hippocampus                  51.8584     9.2134    17.0000    89.0000    72.0000 
    93. 

  93.  13  18      1424     1390.6  Left-Amygdala                     52.2963     7.8224     7.0000    76.0000    69.0000 
    94. 

  94.  14  24      1255     1199.5  CSF                               23.3068    14.0473     1.0000    78.0000    77.0000 
    95. 

  95.  15  26       558      553.0  Left-Accumbens-area               55.6201     5.9168    35.0000    76.0000    41.0000 
    96. 

  96.  16  28      3636     3553.2  Left-VentralDC                    86.5066    12.5903    38.0000   115.0000    77.0000 
    97. 

  97.  17  30        18       29.8  Left-vessel                       46.8889    12.1698    25.0000    66.0000    41.0000 
    98. 

  98.  18  31       697      636.2  Left-choroid-plexus               45.5495    14.9107    12.0000    82.0000    70.0000 
    99. 

  99.  19  43     15867    16175.4  Right-Lateral-Ventricle           11.3474    11.2275     0.0000    80.0000    80.0000 
    100. 

  100.  20  44       352      385.2  Right-Inf-Lat-Vent                31.2727    12.0085     7.0000    62.0000    55.0000 
    101. 

  101.  21  46     12727    13652.5  Right-Cerebellum-White-Matter     83.4246     6.9006    21.0000   100.0000    79.0000 
    102. 

  102.  22  47     57926    58780.1  Right-Cerebellum-Cortex           50.6609    12.7593     0.0000    96.0000    96.0000 
    103. 

  103.  23  49      6649     6374.6  Right-Thalamus-Proper             75.3955    12.2893    19.0000   104.0000    85.0000 
    104. 

  104.  24  50      3860     3830.0  Right-Caudate                     58.3342    10.0225    23.0000    84.0000    61.0000 
    105. 

  105.  25  51      4915     4803.2  Right-Putamen                     69.4543     9.2824    17.0000    97.0000    80.0000 
    106. 

  106.  26  52      1839     1783.3  Right-Pallidum                    96.9826     6.1607    52.0000   114.0000    62.0000 
    107. 

  107.  27  53      4394     4301.3  Right-Hippocampus                 52.7057     9.7084     9.0000    87.0000    78.0000 
    108. 

  108.  28  54      1420     1344.7  Right-Amygdala                    51.3014     7.8351    18.0000    75.0000    57.0000 
    109. 

  109.  29  58       546      517.8  Right-Accumbens-area              54.8938     7.6333    21.0000    79.0000    58.0000 
    110. 

  110.  30  60      3658     3560.5  Right-VentralDC                   85.3592    13.0936    19.0000   115.0000    96.0000 
    111. 

  111.  31  62        11       15.5  Right-vessel                      54.3636     7.6456    41.0000    67.0000    26.0000 
    112. 

  112.  32  63       758      713.2  Right-choroid-plexus              46.8179    14.1510    15.0000    78.0000    63.0000 
    113. 

  113.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    114. 

  114.  34  77      2160     1808.7  WM-hypointensities                65.7889    13.4838    25.0000    98.0000    73.0000 
    115. 

  115.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    117. 

  117.  37  80         0        0.0  non-WM-hypointensities             0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    120. 

  120.  40  85       201      234.7  Optic-Chiasm                      69.9701    20.1539    13.0000   105.0000    92.0000 
    121. 

  121.  41 251      1423     1358.0  CC_Posterior                     100.5896    14.3926    20.0000   117.0000    97.0000 
    122. 

  122.  42 252       621      572.6  CC_Mid_Posterior                  95.4267    18.5900    40.0000   115.0000    75.0000 
    123. 

  123.  43 253       547      524.8  CC_Central                        99.1463    17.1625    40.0000   116.0000    76.0000 
    124. 

  124.  44 254       636      609.3  CC_Mid_Anterior                   97.4465    16.6257    40.0000   114.0000    74.0000 
    125. 

  125.  45 255      1378     1323.6  CC_Anterior                       97.0174    14.9865    40.0000   113.0000    73.0000 
    126.