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ds000114
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freesurfer-6.0.1
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sub-01
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stats
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aseg.stats

aseg.stats 9.6 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/freesurfer/ASegStatsLUT.txt --subject sub-01 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname nid00776
    8. 

  8. # machine  x86_64
    9. 

  9. # user     oesteban
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /corral-repl/utexas/poldracklab/data/OpenNeuro/ds000114/derivatives/freesurfer-6.0.1
    13. 

  13. # subjectname sub-01
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 871181.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 850266.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 850143.816529, mm^3
    17. 

  17. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 17571.000000, mm^3
    18. 

  18. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 174976.943146, mm^3
    19. 

  19. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 173365.911514, mm^3
    20. 

  20. # Measure Cortex, CortexVol, Total cortical gray matter volume, 348342.854660, mm^3
    21. 

  21. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 182452.163579, mm^3
    22. 

  22. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 180969.798290, mm^3
    23. 

  23. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 363421.961869, mm^3
    24. 

  24. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 42081.000000, mm^3
    25. 

  25. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 468232.854660, mm^3
    26. 

  26. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 772326.816529, mm^3
    27. 

  27. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 754755.816529, mm^3
    28. 

  28. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 753942.000000, mm^3
    29. 

  29. # Measure Mask, MaskVol, Mask Volume, 1139944.000000, mm^3
    30. 

  30. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.747662, unitless
    31. 

  31. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 0.978319, unitless
    32. 

  32. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 11, unitless
    33. 

  33. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 18, unitless
    34. 

  34. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 29, unitless
    35. 

  35. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1165206.411631, mm^3
    36. 

  36. # SegVolFile mri/aseg.mgz 
    37. 

  37. # SegVolFileTimeStamp  2019/10/16 21:04:52 
    38. 

  38. # ColorTable /opt/freesurfer/ASegStatsLUT.txt 
    39. 

  39. # ColorTableTimeStamp 2017/10/20 18:17:30 
    40. 

  40. # InVolFile  mri/norm.mgz 
    41. 

  41. # InVolFileTimeStamp  2019/10/16 17:27:00 
    42. 

  42. # InVolFrame 0 
    43. 

  43. # PVVolFile  mri/norm.mgz 
    44. 

  44. # PVVolFileTimeStamp  2019/10/16 17:27:00 
    45. 

  45. # Excluding Cortical Gray and White Matter
    46. 

  46. # ExcludeSegId 0 2 3 41 42 
    47. 

  47. # VoxelVolume_mm3 1 
    48. 

  48. # TableCol  1 ColHeader Index 
    49. 

  49. # TableCol  1 FieldName Index 
    50. 

  50. # TableCol  1 Units     NA 
    51. 

  51. # TableCol  2 ColHeader SegId 
    52. 

  52. # TableCol  2 FieldName Segmentation Id
    53. 

  53. # TableCol  2 Units     NA
    54. 

  54. # TableCol  3 ColHeader NVoxels 
    55. 

  55. # TableCol  3 FieldName Number of Voxels
    56. 

  56. # TableCol  3 Units     unitless
    57. 

  57. # TableCol  4 ColHeader Volume_mm3
    58. 

  58. # TableCol  4 FieldName Volume
    59. 

  59. # TableCol  4 Units     mm^3
    60. 

  60. # TableCol  5 ColHeader StructName
    61. 

  61. # TableCol  5 FieldName Structure Name
    62. 

  62. # TableCol  5 Units     NA
    63. 

  63. # TableCol  6 ColHeader normMean 
    64. 

  64. # TableCol  6 FieldName Intensity normMean
    65. 

  65. # TableCol  6 Units     MR
    66. 

  66. # TableCol  7 ColHeader normStdDev
    67. 

  67. # TableCol  7 FieldName Itensity normStdDev
    68. 

  68. # TableCol  7 Units     MR
    69. 

  69. # TableCol  8 ColHeader normMin
    70. 

  70. # TableCol  8 FieldName Intensity normMin
    71. 

  71. # TableCol  8 Units     MR
    72. 

  72. # TableCol  9 ColHeader normMax
    73. 

  73. # TableCol  9 FieldName Intensity normMax
    74. 

  74. # TableCol  9 Units     MR
    75. 

  75. # TableCol 10 ColHeader normRange
    76. 

  76. # TableCol 10 FieldName Intensity normRange
    77. 

  77. # TableCol 10 Units     MR
    78. 

  78. # NRows 45 
    79. 

  79. # NTableCols 10 
    80. 

  80. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    81. 

  81.   1   4      8543     8836.1  Left-Lateral-Ventricle            13.6351    12.4678     0.0000    82.0000    82.0000 
    82. 

  82.   2   5       316      350.9  Left-Inf-Lat-Vent                 34.1835    14.2576     5.0000    76.0000    71.0000 
    83. 

  83.   3   7      9361    10101.8  Left-Cerebellum-White-Matter      82.3365     6.8835    29.0000    99.0000    70.0000 
    84. 

  84.   4   8     39150    39595.1  Left-Cerebellum-Cortex            51.0945    10.7005     0.0000    86.0000    86.0000 
    85. 

  85.   5  10      5303     5119.2  Left-Thalamus-Proper              73.4699    11.1821    23.0000    99.0000    76.0000 
    86. 

  86.   6  11      2859     2787.3  Left-Caudate                      57.3687     9.7455    24.0000    90.0000    66.0000 
    87. 

  87.   7  12      3710     3572.2  Left-Putamen                      70.4191     8.4798    43.0000    96.0000    53.0000 
    88. 

  88.   8  13      1504     1460.7  Left-Pallidum                     90.3524     7.2509    64.0000   107.0000    43.0000 
    89. 

  89.   9  14      1202     1193.4  3rd-Ventricle                     18.8769    14.5077     0.0000    73.0000    73.0000 
    90. 

  90.  10  15      1263     1402.2  4th-Ventricle                     20.6698    11.8619     2.0000    64.0000    62.0000 
    91. 

  91.  11  16     15292    15572.2  Brain-Stem                        73.4676    10.2208    10.0000   111.0000   101.0000 
    92. 

  92.  12  17      3283     3109.5  Left-Hippocampus                  49.0883    10.3693     8.0000    93.0000    85.0000 
    93. 

  93.  13  18       899      816.4  Left-Amygdala                     50.6129     9.7277    15.0000    77.0000    62.0000 
    94. 

  94.  14  24       880      865.2  CSF                               25.7466    13.1498     3.0000    62.0000    59.0000 
    95. 

  95.  15  26       437      415.5  Left-Accumbens-area               54.9359     6.3798    34.0000    74.0000    40.0000 
    96. 

  96.  16  28      2682     2617.2  Left-VentralDC                    83.3110    12.7747    22.0000   112.0000    90.0000 
    97. 

  97.  17  30        64       66.6  Left-vessel                       47.5938    11.4708    20.0000    71.0000    51.0000 
    98. 

  98.  18  31       421      361.8  Left-choroid-plexus               47.7553    12.3485    19.0000    90.0000    71.0000 
    99. 

  99.  19  43      7577     7859.0  Right-Lateral-Ventricle           14.1379    12.8595     0.0000    75.0000    75.0000 
    100. 

  100.  20  44       323      357.2  Right-Inf-Lat-Vent                35.8235    12.6595     7.0000    67.0000    60.0000 
    101. 

  101.  21  46      9050     9834.9  Right-Cerebellum-White-Matter     82.5422     6.8649    30.0000   101.0000    71.0000 
    102. 

  102.  22  47     38592    38869.8  Right-Cerebellum-Cortex           52.0264    10.8707     0.0000    93.0000    93.0000 
    103. 

  103.  23  49      5183     4974.5  Right-Thalamus-Proper             73.9581    11.2967    26.0000   104.0000    78.0000 
    104. 

  104.  24  50      3146     3049.7  Right-Caudate                     60.4215    10.5294    26.0000    87.0000    61.0000 
    105. 

  105.  25  51      3983     3858.7  Right-Putamen                     69.6146     8.3501    36.0000    92.0000    56.0000 
    106. 

  106.  26  52      1536     1483.5  Right-Pallidum                    91.3125     7.3748    65.0000   109.0000    44.0000 
    107. 

  107.  27  53      3390     3252.5  Right-Hippocampus                 51.6100     9.9831     9.0000    84.0000    75.0000 
    108. 

  108.  28  54      1098     1016.2  Right-Amygdala                    51.0665     9.8131    13.0000    81.0000    68.0000 
    109. 

  109.  29  58       402      349.0  Right-Accumbens-area              56.7189     8.0802    33.0000    82.0000    49.0000 
    110. 

  110.  30  60      2710     2607.5  Right-VentralDC                   83.4055    11.7446    40.0000   111.0000    71.0000 
    111. 

  111.  31  62        14       25.0  Right-vessel                      48.7143     7.7204    34.0000    61.0000    27.0000 
    112. 

  112.  32  63       512      440.2  Right-choroid-plexus              45.4121    12.9138    14.0000    75.0000    61.0000 
    113. 

  113.  33  72         2        4.5  5th-Ventricle                      9.5000     2.1213     8.0000    11.0000     3.0000 
    114. 

  114.  34  77      1651     1413.8  WM-hypointensities                64.2459    14.0704     5.0000    99.0000    94.0000 
    115. 

  115.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    117. 

  117.  37  80         0        0.0  non-WM-hypointensities             0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    120. 

  120.  40  85       107      135.9  Optic-Chiasm                      63.6449    18.5418    15.0000   107.0000    92.0000 
    121. 

  121.  41 251       730      699.7  CC_Posterior                      98.7055    16.2295    37.0000   118.0000    81.0000 
    122. 

  122.  42 252       402      333.0  CC_Mid_Posterior                  76.7612    22.9292    27.0000   119.0000    92.0000 
    123. 

  123.  43 253       364      334.6  CC_Central                        90.4808    20.2017    31.0000   121.0000    90.0000 
    124. 

  124.  44 254       328      304.0  CC_Mid_Anterior                   91.2073    19.7600    24.0000   117.0000    93.0000 
    125. 

  125.  45 255       577      534.6  CC_Anterior                       93.9809    19.2823    29.0000   120.0000    91.0000 
    126.