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- [environment]
- cpu_count = 20
- exec_env = "posix"
- free_mem = 59.9
- overcommit_policy = "heuristic"
- overcommit_limit = "50%"
- nipype_version = "1.8.6"
- templateflow_version = "24.2.0"
- version = "24.1.0.dev28+gfe7c9ff8.d20240822"
- [execution]
- bids_dir = "/data/datasets/bootcamp/bidsdata"
- bids_database_dir = "/home/oesteban/tmp/bootcamp-fmriprep/work/20240902-142152_4e5da58c-02b1-43e6-98e6-a10dbee1c153/bids_db"
- bids_description_hash = "8609ad7fd9016bf3a4bfbcfef278a0e3a30f3088ef7710ecca97f93789be84f7"
- boilerplate_only = false
- sloppy = false
- debug = []
- fmriprep_dir = "/data/derivatives/bootcamp-geneva/fmriprep-24.0.0"
- fs_license_file = "/home/oesteban/.freesurfer.txt"
- fs_subjects_dir = "/data/derivatives/bootcamp-geneva/fmriprep-24.0.0/sourcedata/freesurfer"
- layout = "BIDS Layout: ...ata/datasets/bootcamp/bidsdata | Subjects: 5 | Sessions: 0 | Runs: 0"
- log_dir = "/data/derivatives/bootcamp-geneva/fmriprep-24.0.0/logs"
- log_level = 15
- low_mem = false
- md_only_boilerplate = false
- notrack = false
- track_carbon = false
- country_code = "CAN"
- output_dir = "/data/derivatives/bootcamp-geneva/fmriprep-24.0.0"
- me_output_echos = false
- aggr_ses_reports = 4
- output_layout = "bids"
- output_spaces = "MNI152NLin2009cAsym:res-native"
- reports_only = false
- run_uuid = "20240902-142152_4e5da58c-02b1-43e6-98e6-a10dbee1c153"
- participant_label = [ "11", "14", "15", "16", "17",]
- templateflow_home = "/data/datasets/templateflow-s3"
- work_dir = "/home/oesteban/tmp/bootcamp-fmriprep/work"
- write_graph = false
- [workflow]
- anat_only = true
- bold2anat_dof = 6
- bold2anat_init = "auto"
- cifti_output = false
- fmap_bspline = false
- force_syn = false
- hires = true
- fs_no_resume = false
- ignore = []
- level = "full"
- longitudinal = false
- run_msmsulc = true
- medial_surface_nan = false
- project_goodvoxels = false
- regressors_all_comps = false
- regressors_dvars_th = 1.5
- regressors_fd_th = 0.5
- run_reconall = true
- skull_strip_fixed_seed = false
- skull_strip_template = "OASIS30ANTs"
- skull_strip_t1w = "force"
- slice_time_ref = 0.5
- spaces = "MNI152NLin2009cAsym:res-native"
- use_syn_sdc = false
- me_t2s_fit_method = "curvefit"
- [nipype]
- crashfile_format = "txt"
- get_linked_libs = false
- nprocs = 8
- omp_nthreads = 12
- plugin = "MultiProc"
- remove_unnecessary_outputs = true
- resource_monitor = false
- stop_on_first_crash = false
- [seeds]
- master = 44610
- ants = 7861
- numpy = 19738
- [execution.derivatives]
- [execution.dataset_links]
- raw = "/data/datasets/bootcamp/bidsdata"
- templateflow = "/data/datasets/templateflow-s3"
- [nipype.plugin_args]
- maxtasksperchild = 1
- raise_insufficient = false
- [execution.bids_filters.t1w]
- acquisition = "denoised"
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