|
@@ -1,3 +1,20 @@
|
|
|
# behav-analysis-course
|
|
|
|
|
|
-Sample datasets used for behavioural analyses courses organised by the Neuroinformatics Unit.
|
|
|
+This repository hosts sample data for the
|
|
|
+[behavioural analysis course](https://software-skills.neuroinformatics.dev/courses/video-analysis.html) taking place at the [Sainsbury Wellcome Centre (SWC)](https://www.sainsburywellcome.org/web/)
|
|
|
+in November 2023.
|
|
|
+
|
|
|
+Currently it contains a single dataset - `mouse-EPM` - which is a mouse performing
|
|
|
+the elevated plus maze task.
|
|
|
+
|
|
|
+The raw videos in `mouse-EPM/rawdata` are organised according to the
|
|
|
+[NeuroBlueprint specification](https://neuroblueprint.neuroinformatics.dev/)
|
|
|
+
|
|
|
+The `mouse-EPM/derivatives` folder contains some pose estimation results
|
|
|
+from [DeepLabCut](https://www.mackenziemathislab.org/deeplabcut) and [SLEAP](https://sleap.ai/).
|
|
|
+
|
|
|
+The videos and DeepLabCut analysis results have been contributed by
|
|
|
+[Loukia Katsouri](https://www.sainsburywellcome.org/web/people/loukia-katsouri)
|
|
|
+of the [O'Keefe Lab](https://www.sainsburywellcome.org/web/groups/okeefe-lab) at the SWC.
|
|
|
+The SLEAP analysis was performed by [Niko Sirmpilatze](https://github.com/niksirbi).
|
|
|
+
|