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README.md

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 # Resolving and rescuing developmental miswiring in a mouse model of cognitive impairment
 
 This repository contains the ephys data related to the article "Resolving and rescuing developmental miswiring in a mouse model of cognitive impairment". 
-We provide recordings from the prefrontal cortex of 60 not-anesthetized mice of 4 to 10 days of age.
-Following the structure of the article, the dataset can be summarized as containing recordings of:
+We provide in vivo recordings (LFP and SUA data) from the prefrontal cortex of 60 not-anesthetized mice of 4 to 10 days of age.
+Following the structure of the article, the dataset contains recordings of:
   - 13 P4-6 control mice
   - 13 P4-6 dual-hit GE mice
   - 16 P8-10 control mice
   - 18 P8-10 dual-hit GE mice
   
-LFP raw signals:
+### LFP raw signals:
 This folder contains .dat files with the LFP raw traces of the 60 recordings.
 
-    Electrode channels:
+**Electrode channels:**
 
-    All recordings contain 16 channels recorded with a Neuronexus 4x4 4-shank electrode. Neighboring channels on the same shank are 100 micrometers apart. Channels at the same depth and on neighboring shanks are 125 micrometers apart.
-    Channels 1 to 4 are the most medial ones and channels 13 to 16 the most lateral. 
-    The probe spans from layer II to layer V/VI of the prelimbic section of the prefrontal cortex. 
-    Channels 1-5-9-13 are the most superficial, and 4-8-12-16 the deepest.
-    The position of every electrode has been post-mortem histologycally reconstructed and the column "shift" in Recording Metadata.xlsx indicates the optimal shift (in shanks) to realign the channels. A positive shift indicates that the channel was too inserted too medially (e.g. shift = 1 -> channels 5:8 correspond to channels 1:4 of an optimally inserted electrode), whereas a negative shift indicates a lateral insertion (e.g. shift = -2 -> channels 1:4 correspond to channels 9:12 of an optimally inserted electrode).
+* All recordings contain 16 channels recorded with a Neuronexus 4x4 4-shank electrode. Neighboring channels on the same shank are 100 micrometers apart. Channels at the same depth and on neighboring shanks are 125 micrometers apart.
+* Channels 1 to 4 are the most medial ones and channels 13 to 16 the most lateral. 
+* The probe spans from layer II to layer V/VI of the prelimbic section of the prefrontal cortex. 
+* Channels 1-5-9-13 are the most superficial, and 4-8-12-16 the deepest.
+* The position of every electrode has been post-mortem histologycally reconstructed and the column "shift" in Recording Metadata.xlsx indicates the optimal shift (in shanks) to realign the channels. A positive shift indicates that the channel was too inserted too medially (e.g. shift = 1 -> channels 5:8 correspond to channels 1:4 of an optimally inserted electrode), whereas a negative shift indicates a lateral insertion (e.g. shift = -2 -> channels 1:4 correspond to channels 9:12 of an optimally inserted electrode).
     
-    Signal:
-    The signal is in int16 format, with a sampling frequency of 1000 Hz.
-    Signal as been common average rereferenced (the mean of all channels has been subtracted).
-    Most recordings are ~ 1h 30' of uniterrupted recording. All recordings are at least 50' long.
-    Data is in a single vector form. The first sixteen data points correspond to the first millisecond of recording for the sixtenn channels (from channel 1 to 16). The second sixteen data points to the second millisecond and so on.
+**Signal:**
 
+* The signal is in int16 format, with a sampling frequency of 1000 Hz.
+* Signal as been common average rereferenced (the mean of all channels has been subtracted).
+* Most recordings are ~ 1h 30' of uniterrupted recording. All recordings are at least 50' long.
+* Data is in a single vector form. The first sixteen data points correspond to the first datapoint (millisecond) of recording for all the sixtenn channels (from channel 1 to 16). The second sixteen data points to the second datapoint and so on.
 
-SUA info:
+
+### SUA info:
 
 This folder contains information about manually sorted single units from the recordings. Spike sorting has been done using klusta (https://klusta.readthedocs.io/en/latest/), and manually curated with Phy (https://phy.readthedocs.io/en/latest/).
 
-For every recording, a MATLAB structure with the following info for every unit is provided:
-    - channel: the channel on which the unit has been detected
-    - Timestamps: timestamps (in ms) of detected action potential
-    - Waveform: the average waveform of the unit
-    - Amplitudes: the amplitude of all the detected action potentials
-    - file: the LFP file it is referred to
+* For every recording, a MATLAB structure with the following info for every unit is provided:
+* channel: the channel on which the unit has been detected
+* Timestamps: timestamps (in ms) of detected action potential
+* Waveform: the average waveform of the unit
+* Amplitudes: the amplitude of all the detected action potentials
+* file: the LFP file it is referred to
 
 
 For every question and/or further data request, please don't hesitate in contacting me.