crash-20200518-230517-f00275v-std_mask.a0-4503d64f-130b-464d-bafa-b9b9c1e25787.txt 3.1 KB

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  1. Node: fmriprep_wf.single_subject_01_wf.anat_preproc_wf.anat_norm_wf.std_mask
  2. Working directory: /dartfs/rc/lab/D/DBIC/cosanlab/work/fmriprep_wf/single_subject_01_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/std_mask
  3. Node inputs:
  4. args = <undefined>
  5. default_value = 0.0
  6. dimension = 3
  7. environ = {'NSLOTS': '1'}
  8. float = True
  9. input_image = <undefined>
  10. input_image_type = <undefined>
  11. interpolation = MultiLabel
  12. interpolation_parameters = <undefined>
  13. invert_transform_flags = <undefined>
  14. num_threads = 1
  15. out_postfix = _trans
  16. output_image = <undefined>
  17. print_out_composite_warp_file = <undefined>
  18. reference_image = <undefined>
  19. transforms = ['/dartfs/rc/lab/D/DBIC/cosanlab/work/fmriprep_wf/single_subject_01_wf/anat_preproc_wf/anat_norm_wf/_template_MNI152NLin2009cAsym/registration/ants_t1_to_mniComposite.h5']
  20. Traceback (most recent call last):
  21. File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/multiproc.py", line 67, in run_node
  22. result["result"] = node.run(updatehash=updatehash)
  23. File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 443, in run
  24. cached, updated = self.is_cached()
  25. File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 332, in is_cached
  26. hashed_inputs, hashvalue = self._get_hashval()
  27. File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 538, in _get_hashval
  28. self._get_inputs()
  29. File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 580, in _get_inputs
  30. outputs = _load_resultfile(results_fname).outputs
  31. File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 293, in load_resultfile
  32. result = loadpkl(results_file)
  33. File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 672, in loadpkl
  34. raise e
  35. File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 649, in loadpkl
  36. unpkl = pickle.loads(pkl_contents)
  37. File "/usr/local/miniconda/lib/python3.7/site-packages/traits/has_traits.py", line 1440, in __setstate__
  38. self.trait_set( trait_change_notify = trait_change_notify, **state )
  39. File "/usr/local/miniconda/lib/python3.7/site-packages/traits/has_traits.py", line 1543, in trait_set
  40. setattr( self, name, value )
  41. File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/traits_extension.py", line 329, in validate
  42. value = super(File, self).validate(objekt, name, value, return_pathlike=True)
  43. File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/traits_extension.py", line 134, in validate
  44. self.error(objekt, name, str(value))
  45. File "/usr/local/miniconda/lib/python3.7/site-packages/traits/trait_handlers.py", line 172, in error
  46. value )
  47. traits.trait_errors.TraitError: The 't1w_file' trait of a _TemplateFlowSelectOutputSpec instance must be a pathlike object or string representing an existing file, but a value of '/dartfs-hpc/rc/home/1/f0034g1/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-01_T1w.nii.gz' <class 'str'> was specified.