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install.rst

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  1. ************
    2. 

  2. Installation
    3. 

  3. ************
    4. 

  4. 

  5. Neo is a pure Python package, so it should be easy to get it running on any
    6. 

  6. system.
    7. 

  7. 

  8. Dependencies
    9. 

  9. ============
    10. 

  10.   
    11. 

  11.     * Python_ >= 2.6
    12. 

  12.     * numpy_ >= 1.7.1
    13. 

  13.     * quantities_ >= 0.9.0
    14. 

  14. 

  15. For Debian/Ubuntu, you can install these using::
    16. 

  16. 

  17.     $ apt-get install python-numpy python-pip
    18. 

  18.     $ pip install quantities
    19. 

  19. 

  20. You may need to run these as root. For other operating systems, you can
    21. 

  21. download installers from the links above, or use a scientific Python distribution
    22. 

  22. such as Anaconda_.
    23. 

  23. 

  24. Certain IO modules have additional dependencies. If these are not satisfied,
    25. 

  25. Neo will still install but the IO module that uses them will fail on loading:
    26. 

  26. 

  27.    * scipy >= 0.12.0 for NeoMatlabIO
    28. 

  28.    * h5py >= 2.5 for Hdf5IO, KwikIO
    29. 

  29.    * klusta for KwikIO
    30. 

  30.    * igor >= 0.2 for IgorIO
    31. 

  31.    * nixio >= 1.2 for NixIO
    32. 

  32.    * stfio for StimfitIO
    33. 

  33. 

  34. 

  35. Installing from the Python Package Index
    36. 

  36. ========================================
    37. 

  37. 

  38. .. warning:: alpha and beta releases cannot be installed from PyPI.
    39. 

  39. 

  40. If you have pip_ installed::
    41. 

  41. 

  42.     $ pip install neo
    43. 

  43.     
    44. 

  44. This will automatically download and install the latest release (again
    45. 

  45. you may need to have administrator privileges on the machine you are installing
    46. 

  46. on).
    47. 

  47.     
    48. 

  48. To download and install manually, download:
    49. 

  49. 

  50.     https://github.com/NeuralEnsemble/python-neo/archive/neo-0.5.1.zip
    51. 

  51. 

  52. Then::
    53. 

  53. 

  54.     $ unzip neo-0.5.1.zip
    55. 

  55.     $ cd neo-0.5.1
    56. 

  56.     $ python setup.py install
    57. 

  57.     
    58. 

  58. or::
    59. 

  59. 

  60.     $ python3 setup.py install
    61. 

  61.     
    62. 

  62. depending on which version of Python you are using.
    63. 

  63. 

  64. 

  65. Installing from source
    66. 

  66. ======================
    67. 

  67. 

  68. To install the latest version of Neo from the Git repository::
    69. 

  69. 

  70.     $ git clone git://github.com/NeuralEnsemble/python-neo.git
    71. 

  71.     $ cd python-neo
    72. 

  72.     $ python setup.py install
    73. 

  73. 

  74. 

  75. .. _`Python`: http://python.org/
    76. 

  76. .. _`numpy`: http://numpy.scipy.org/
    77. 

  77. .. _`quantities`: http://pypi.python.org/pypi/quantities
    78. 

  78. .. _`pip`: http://pypi.python.org/pypi/pip
    79. 

  79. .. _`setuptools`: http://pypi.python.org/pypi/setuptools
    80. 

  80. .. _Anaconda: https://www.continuum.io/downloads
    81.