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- ************
- Installation
- ************
- Neo is a pure Python package, so it should be easy to get it running on any
- system.
- Dependencies
- ============
-
- * Python_ >= 2.7
- * numpy_ >= 1.7.1
- * quantities_ >= 0.9.0
- For Debian/Ubuntu, you can install these using::
- $ apt-get install python-numpy python-pip
- $ pip install quantities
- You may need to run these as root. For other operating systems, you can
- download installers from the links above, or use a scientific Python distribution
- such as Anaconda_.
- Certain IO modules have additional dependencies. If these are not satisfied,
- Neo will still install but the IO module that uses them will fail on loading:
- * scipy >= 0.12.0 for NeoMatlabIO
- * h5py >= 2.5 for Hdf5IO, KwikIO
- * klusta for KwikIO
- * igor >= 0.2 for IgorIO
- * nixio >= 1.2 for NixIO
- * stfio for StimfitIO
- Installing from the Python Package Index
- ========================================
- .. warning:: alpha and beta releases cannot be installed from PyPI.
- If you have pip_ installed::
- $ pip install neo
-
- This will automatically download and install the latest release (again
- you may need to have administrator privileges on the machine you are installing
- on).
-
- To download and install manually, download:
- https://github.com/NeuralEnsemble/python-neo/archive/neo-0.5.2.zip
- Then::
- $ unzip neo-0.5.2.zip
- $ cd neo-0.5.2
- $ python setup.py install
-
- or::
- $ python3 setup.py install
-
- depending on which version of Python you are using.
- Installing from source
- ======================
- To install the latest version of Neo from the Git repository::
- $ git clone git://github.com/NeuralEnsemble/python-neo.git
- $ cd python-neo
- $ python setup.py install
- .. _`Python`: http://python.org/
- .. _`numpy`: http://numpy.scipy.org/
- .. _`quantities`: http://pypi.python.org/pypi/quantities
- .. _`pip`: http://pypi.python.org/pypi/pip
- .. _`setuptools`: http://pypi.python.org/pypi/setuptools
- .. _Anaconda: https://www.continuum.io/downloads
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