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- set anat = ../mprage+orig.HEAD
- set epi = ../REST.nii.gz
- set sid = FATCAT
- # result is aligned to anat, which is aligned with DWI
- # no blur, to match vol and surf analyses
- afni_proc.py -subj_id $sid \
- -dsets $epi \
- -copy_anat $anat \
- -blocks despike tshift align volreg mask regress \
- -tcat_remove_first_trs 3 \
- -volreg_align_e2a \
- -regress_anaticor \
- -regress_censor_motion 0.2 \
- -regress_censor_outliers 0.1 \
- -regress_bandpass 0.01 0.1 \
- -regress_apply_mot_types demean deriv \
- -regress_run_clustsim no \
- -regress_est_blur_errts
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