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- #!/usr/bin/env tcsh
- # created by uber_subject.py: version 0.41 (October 6, 2017)
- # creation date: Tue Oct 10 09:47:13 2017
- # - generated by s04.cmd.usubj, with -execute added,
- # - modified for check_flip and radial_correlate
- # set subject and group identifiers
- set subj = FT
- set gname = horses
- # set data directory
- set top_dir = ${subj}
- # run afni_proc.py to create a single subject processing script
- afni_proc.py -subj_id $subj \
- -blocks tshift align tlrc volreg blur mask scale regress \
- -radial_correlate_blocks tcat volreg \
- -copy_anat $top_dir/${subj}_anat+orig \
- -dsets \
- $top_dir/${subj}_epi_r1+orig.HEAD \
- $top_dir/${subj}_epi_r2+orig.HEAD \
- $top_dir/${subj}_epi_r3+orig.HEAD \
- -tcat_remove_first_trs 2 \
- -align_opts_aea -check_flip \
- -volreg_align_to MIN_OUTLIER \
- -volreg_align_e2a \
- -volreg_tlrc_warp \
- -blur_size 4.0 \
- -mask_epi_anat yes \
- -regress_stim_times \
- $top_dir/AV1_vis.txt \
- $top_dir/AV2_aud.txt \
- -regress_stim_labels \
- vis aud \
- -regress_basis 'BLOCK(20,1)' \
- -regress_censor_motion 0.3 \
- -regress_motion_per_run \
- -regress_opts_3dD \
- -jobs 2 \
- -gltsym 'SYM: vis -aud' -glt_label 1 V-A \
- -gltsym 'SYM: 0.5*vis +0.5*aud' -glt_label 2 mean.VA \
- -regress_compute_fitts \
- -regress_make_ideal_sum sum_ideal.1D \
- -regress_est_blur_epits \
- -regress_est_blur_errts \
- -regress_run_clustsim no \
- -execute
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