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- #!/bin/tcsh
- # a currently standard example of the command, but not through uber_subject.py
- set sid = FT # subject to process
- set subj = $sid.align # subject ID for result (align case)
- afni_proc.py -subj_id $subj \
- -dsets $sid/${sid}_epi_r?+orig.HEAD \
- -do_block tlrc align \
- -copy_anat $sid/${sid}_anat+orig \
- -tcat_remove_first_trs 2 \
- -blur_in_mask yes \
- -volreg_align_to MIN_OUTLIER \
- -volreg_tlrc_warp \
- -volreg_align_e2a \
- -regress_stim_times $sid/AV*.txt \
- -regress_stim_labels Vrel Arel \
- -regress_basis 'BLOCK(20,1)' \
- -regress_make_ideal_sum sum_ideal.1D \
- -regress_censor_motion 0.3 \
- -regress_opts_3dD \
- -jobs 2 \
- -gltsym 'SYM: Vrel -Arel' \
- -glt_label 1 V-A \
- -regress_reml_exec \
- -regress_est_blur_epits \
- -regress_est_blur_errts
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