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- #!/usr/bin/env tcsh
- # created by uber_subject.py: version 0.37 (April 14, 2015)
- # creation date: Thu Sep 10 14:27:59 2015
- # ** Also, have the proc script executed automatically
- # using -execute.
- # set data directories
- set top_dir = ../FT
- set warpdir = anat_warped
- # set subject and group identifiers
- set subj = FT
- set group_id = pandas
- # set base dataset for transformations
- set bpath = `@FindAfniDsetPath MNI152_2009_template_SSW.nii.gz`
- if( "$bpath" == "" )then
- echo "** ERROR: cannot find MNI152_2009_template_SSW.nii.gz"
- exit 1
- endif
- set basedset = $bpath/MNI152_2009_template_SSW.nii.gz
- # run afni_proc.py to create a single subject processing script
- afni_proc.py -subj_id $subj \
- -script proc.$subj -scr_overwrite \
- -blocks tshift align tlrc volreg blur mask scale regress \
- -out_dir $subj.results.Qwarp \
- -copy_anat $warpdir/anatSS.FT.nii \
- -anat_has_skull no \
- -tcat_remove_first_trs 2 \
- -dsets \
- $top_dir/FT_epi_r1+orig.HEAD \
- $top_dir/FT_epi_r2+orig.HEAD \
- $top_dir/FT_epi_r3+orig.HEAD \
- -volreg_align_to MIN_OUTLIER \
- -volreg_align_e2a \
- -volreg_tlrc_warp \
- -tlrc_base $basedset \
- -tlrc_NL_warp \
- -tlrc_NL_warped_dsets \
- $warpdir/anatQQ.FT.nii $warpdir/anatQQ.FT.aff12.1D $warpdir/anatQQ.FT_WARP.nii \
- -blur_size 4.0 \
- -regress_stim_times \
- $top_dir/AV1_vis.txt \
- $top_dir/AV2_aud.txt \
- -regress_stim_labels \
- vis aud \
- -regress_basis 'BLOCK(20,1)' \
- -regress_censor_motion 0.3 \
- -regress_opts_3dD \
- -jobs 2 \
- -gltsym 'SYM: vis -aud' -glt_label 1 V-A \
- -gltsym 'SYM: 0.5*vis +0.5*aud' -glt_label 2 mean.VA \
- -regress_compute_fitts \
- -regress_make_ideal_sum sum_ideal.1D \
- -regress_est_blur_errts \
- -regress_run_clustsim no \
- -regress_3dD_stop \
- -regress_reml_exec \
- -execute
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