12345678910111213141516171819202122232425262728293031323334353637383940414243444546474849 |
- #!/usr/bin/env tcsh
- # created by uber_subject.py: version 0.37 (April 14, 2015)
- # creation date: Thu Sep 10 14:27:59 2015
- set top_dir = ../FT
- # set subject and group identifiers
- set subj = FT
- set group_id = horses
- # run afni_proc.py to create a single subject processing script
- afni_proc.py -subj_id $subj \
- -write_3dD_script proc.3dd.ppi.post.full \
- -write_3dD_prefix PPI.full. \
- -script proc.$subj -scr_overwrite \
- -blocks tshift align tlrc volreg blur mask scale regress \
- -copy_anat $top_dir/FT_anat+orig \
- -tcat_remove_first_trs 2 \
- -dsets \
- $top_dir/FT_epi_r1+orig.HEAD \
- $top_dir/FT_epi_r2+orig.HEAD \
- $top_dir/FT_epi_r3+orig.HEAD \
- -volreg_align_to third \
- -volreg_align_e2a \
- -volreg_tlrc_warp \
- -blur_size 4.0 \
- -regress_stim_times \
- $top_dir/AV1_vis.txt \
- $top_dir/AV2_aud.txt \
- -regress_stim_labels \
- vis aud \
- -regress_extra_stim_files \
- stimuli/p6.Laud.01.vis.rall.PPI.1D \
- stimuli/p6.Laud.02.aud.rall.PPI.1D \
- stimuli/ppi.seed.1D \
- -regress_extra_stim_labels PPI.vis PPI.aud PPI.seed \
- -regress_basis 'BLOCK(20,1)' \
- -regress_censor_motion 0.3 \
- -regress_opts_3dD \
- -jobs 2 \
- -gltsym 'SYM: vis -aud' -glt_label 1 V-A \
- -gltsym 'SYM: PPI.vis -PPI.aud' -glt_label 2 PPI:V-A \
- -regress_compute_fitts \
- -regress_make_ideal_sum sum_ideal.1D \
- -regress_est_blur_epits \
- -regress_est_blur_errts \
- -regress_run_clustsim no
|