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- #!/bin/tcsh
- ## Get the list of unique image files
- ## * The reason for doing this unique image list
- ## is that sometimes multiple copies of the same
- ## image are output by DICOM server software,
- ## and that is confusing to the Dimon program.
- ## * The uniq_images program will make a list of
- ## images that are not identical.
- ## * uniq_images is an AFNI package program.
- uniq_images I*[0123456789] > uniq_image_list.txt
- ## run Dimon to read in the files and create a NIFTI format dataset
- ## * the list of input files is from uniq_images
- ## * the output filename prefix will be T1.3D
- ## * the output file will be stored in the directory
- ## above this one
- ## * the input files will be sorted by acquisition time,
- ## not by filename
- ## * if the DICOM header has duplicate elements, use
- # the last copy found, not the first
- Dimon -infile_list uniq_image_list.txt \
- -gert_create_dataset \
- -gert_write_as_nifti \
- -gert_to3d_prefix T1.3D \
- -gert_outdir .. \
- -dicom_org \
- -use_last_elem \
- -save_details Dimon.details \
- -gert_quit_on_err
- ## delete the list of unique images
- \rm uniq_image_list.txt
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