laura_busse/natfeedback_code_eLife: Data and code for "Robust effects of corticothalamic feedback and behavioral state on movie responses in mouse dLGN" @ 2bf386a9ffa205b4091436a5c8a89e00cc10a03b

Data and code for "Robust effects of corticothalamic feedback and behavioral state on movie responses in mouse dLGN"

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Laura Busse 2bf386a9ff Initial upload		před 2 roky
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fig1.py	08505455c2 Clean up irrelevant comments & code blocks, fix .csv filenames	před 2 roky
fig1S33S1.py	08505455c2 Clean up irrelevant comments & code blocks, fix .csv filenames	před 2 roky
fig1S4.py	1c15e1f2f2 Initial commit copied over from natfeedback_code 2022-02-07 rev 9eabb0	před 2 roky
fig1S5.py	1c15e1f2f2 Initial commit copied over from natfeedback_code 2022-02-07 rev 9eabb0	před 2 roky
fig1S6.py	a1becb1549 fig1S6: restore missing insig pupil diam mseus .csv file	před 2 roky
fig2.py	08505455c2 Clean up irrelevant comments & code blocks, fix .csv filenames	před 2 roky
fig3.py	08505455c2 Clean up irrelevant comments & code blocks, fix .csv filenames	před 2 roky
fig4.py	08505455c2 Clean up irrelevant comments & code blocks, fix .csv filenames	před 2 roky
fig4S1.py	08505455c2 Clean up irrelevant comments & code blocks, fix .csv filenames	před 2 roky
fig5.py	08505455c2 Clean up irrelevant comments & code blocks, fix .csv filenames	před 2 roky
fig5S2.py	08505455c2 Clean up irrelevant comments & code blocks, fix .csv filenames	před 2 roky
fig6.py	08505455c2 Clean up irrelevant comments & code blocks, fix .csv filenames	před 2 roky
ipos.py	08505455c2 Clean up irrelevant comments & code blocks, fix .csv filenames	před 2 roky
main.py	65d9bbdbf2 Add note that not all pickle files apply to any given EXPTYPE	před 2 roky
util.py	08505455c2 Clean up irrelevant comments & code blocks, fix .csv filenames	před 2 roky

Data and code for Spacek et. al., 2022, "Robust effects of corticothalamic feedback and behavioral state on movie responses in mouse dLGN", accepted in eLife.

https://doi.org/10.1101/776237

Use main.py to load data for all LGN opto experiments as a function of stimulus type (movies, gratings), run state, and opto state. Data are loaded from pandas DataFrames, which are saved as Python pickles in the pickles folder.

Run main.py at the IPython command line, or in Jupyter; the -i runs scripts in IPython/Jupyter's namespace instead of an empty one:

run -i main.py

pvmvis (default) or ntsrmvis can be provided as an --exptype= argument to this main.py, to load and then plot PV-Cre (most of the paper) or Ntsr1-Cre (Fig S4) data, respectively.

Results can be plotted by executing the desired figx.py file in the same namespace:

run -i fig1.py
run -i fig2.py
run -i fig3.py
run -i fig4.py
run -i fig5.py
run -i fig6.py

Not all supplementary panels/figures have their own script, some are integrated into their parent figure's script for convenience:

run -i fig1S33S1.py
run -i fig1S4.py
run -i fig1S5.py
run -i fig1S6.py
run -i fig4S1.py
run -i fig5S2.py
run -i ipos.py

Note that depending on your system, you may have to call plt.show() to actually display figure windows after running one or more of the above scripts. Use cf() to quickly close all figures.

README.md