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larkumlab
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Ronny_Bergmann_AirtrackMotorPlanning_FormattedData
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10.12751/g-node.hhxe3v
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Formatted data set for the "AirtrackMotorPlanning" project (examines whether whiskers and pupil positions predict the animal's motor plans). https://doi.org/10.1523/ENEURO.0089-22.2022

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README.md

Formatted data for: Bergmann, Sehara et al., 2022

Formatted data set for the "AirtrackMotorPlanning" project (examines whether whiskers and pupil positions predict the animal's motor plans).

The dataset stored here is part of the root data repository, and it is:

Contents

File organization

File names

The files are organized as: <ANIMAL>/<SESSION>/<DOMAIN>/<ANIMAL>_<SESSION>_<DOMAIN>_run<TRIAL>, where:

  • ANIMAL representing the ID of the animal (in the pattern MLAxxxxxx).
  • SESSION being the name of the session (in the pattern sessionYYYY-MM-DD-001).
  • DOMAIN representing the domain of recording (see below).
  • TRIAL being the trial index during the session.

Domain names

Domain name Description
tracking whisking radius and angles, pupil positions and diameters, aligned with the 200 Hz trial timebase.
states CSV files containing manual annotation of behavioral states based on the top-view videos, trial-based. Merely the copy from the raw data.
merged-video the top-view videos overlaid with eye videos, along with the annotated behavioral states, in the form of single videos. The video quality is not so high. Used for visual examination of video alignment.
annotated-plot the plot of whisking angles, eye positions, and annotated behavioral states, in the form similar to Figure 1 of the paper.

TRIALS.csv

Each session directory has the TRIALS.csv file, including information about the state of alignment between the top-view and eye videos. The columns represent:

  • Trial: the index of the trial
  • ContextCoupling:
  • EyeVideos: the status of the eye videos.
    • OK: the eye videos are aligned nicely with the top-view videos.
    • OutOfSync: the eye videos and the top-view videos seem to record different trials, so they cannot be analyzed together.
    • NoVideos: no recording of eye videos seem to have occurred.

Copyright (c) 2022, Ronny Bergmann, Keisuke Sehara, Sina E. Dominiak, Julien Colomb, Jens Kremkow, Matthew E. Larkum, Robert N. S. Sachdev, CC-BY 4.0

datacite.yml
Title Formatted data for Bergmann, Sehara et al., 2022 eNeuro (eye-whisker coordination on Airtrack)
Authors Bergmann,Ronny;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany.;ORCID:0000-0002-1477-7502
Sehara,Keisuke;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany.;ORCID:0000-0003-4368-8143
Dominiak,Sina E.;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany.
Colomb,Julien;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany.;ORCID:0000-0002-3127-5520
Kremkow,Jens;Charité–Universitätsmedizin Berlin, Berlin, 10117 Germany.;ORCID:0000-0001-7077-4528
Larkum,Matthew E.;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany.;ORCID:0000-0001-9799-2656
Sachdev,Robert N.S.;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany.;ORCID:0000-0002-6627-0199
Description Data repository for Bergmann R, Sehara K, Dominiak SE, Kremkow J, Larkum ME, Sachdev RNS, 2022 eNeuro "Coordination between eye movement and whisking in head fixed mice navigating a plus-maze". This repository contains the dataset being formatted for the analysis.
License Creative Commons 4.0 Attribution (https://creativecommons.org/licenses/by/4.0/)
References Bergmann R, Sehara K, Dominiak SE, Kremkow J, Larkum ME, Sachdev RNS (2022) Coordination between eye movement and whisking in head fixed mice navigating a plus-maze. [https://doi.org/10.1523/ENEURO.0089-22.2022] (IsSupplementTo)
Bergmann R, Sehara K, Dominiak SE, Colomb J, Kremkow J, Larkum ME, Sachdev RN (2022) Data for Bergmann, Sehara et al., 2022 eNeuro (eye-whisker coordination on Airtrack). G-Node. https://doi.org/10.12751/g-node.j9wxqe [https://doi.org/10.12751/g-node.j9wxqe] (IsPartOf)
Bergmann R, Sehara K, Dominiak SE, Colomb J, Kremkow J, Larkum ME, Sachdev RN (2022) Raw data for Bergmann, Sehara et al., 2022 eNeuro (eye-whisker coordination on Airtrack). G-Node. https://doi.org/10.12751/g-node.g8f1jc [https://doi.org/10.12751/g-node.g8f1jc] (IsDerivedFrom)
Bergmann R, Sehara K, Dominiak SE, Colomb J, Kremkow J, Larkum ME, Sachdev RN (2022) Whisker-tracking data for Bergmann, Sehara et al., 2022 eNeuro (eye-whisker coordination on Airtrack). G-Node. https://doi.org/10.12751/g-node.s62hni [https://doi.org/10.12751/g-node.s62hni] (IsDerivedFrom)
Bergmann R, Sehara K, Dominiak SE, Colomb J, Kremkow J, Larkum ME, Sachdev RN (2022) Eye-tracking data for Bergmann, Sehara et al., 2022 eNeuro (eye-whisker coordination on Airtrack). G-Node. https://doi.org/10.12751/g-node.5jz67s [https://doi.org/10.12751/g-node.5jz67s] (IsDerivedFrom)
Funding EU, EU.670118
EU, EU.327654276
EU, EU.720270
EU, EU.785907
EU, EU.945539
DFG, DFG.250048060
DFG, DFG.246731133
DFG, DFG.267823436
Keywords Neuroscience
Behavioral tracking
Motor coordination
Whiskers
Pupil tracking
Airtrack
Resource Type Dataset