The DeepLabCut project for eye tracking. https://doi.org/10.1523/ENEURO.0089-22.2022

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Keisuke Sehara 39c6920fc4 add datacite again		hace 2 años
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README.md	a8ab545911 add datacite.yml	hace 2 años
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Eye-tracking model

The DeepLabCut project for eye tracking for the "AirtrackMotorPlanning" project (examines whether whiskers and pupil positions predict the animal's motor plans).

The dataset stored here is part of the root data repository, and it is:

used for the eye-tracking dataset.
based on the raw dataset.

How to use

Install DeepLabCut before use.

We recommend using the following version:

$ git clone https://github.com/gwappa/DeepLabCut.git && cd DeepLabCut
$ git checkout v2.1.8ks

Clone this repository.
- probably you will also need to run gin get-content . inside the directory dlc-models/iteration-6 (but only the snapshot 1030000 will be needed).
Modify the path in eyes-Keisuke-2019-12-08/config.yaml to match the actual situation.

Then the deeplabcut library can be used with eyes-Keisuke-2019-12-08.

License

datacite.yml
Title	DeepLabCut model repository for Bergmann, Sehara et al., 2022 eNeuro (eye-whisker coordination on Airtrack)
Authors	Bergmann,Ronny;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany.;ORCID:0000-0002-1477-7502 Sehara,Keisuke;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany.;ORCID:0000-0003-4368-8143 Dominiak,Sina E.;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany. Colomb,Julien;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany.;ORCID:0000-0002-3127-5520 Kremkow,Jens;Charité–Universitätsmedizin Berlin, Berlin, 10117 Germany.;ORCID:0000-0001-7077-4528 Larkum,Matthew E.;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany.;ORCID:0000-0001-9799-2656 Sachdev,Robert N.S.;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany.;ORCID:0000-0002-6627-0199
Description	Model repository for Bergmann R, Sehara K, Dominiak SE, Kremkow J, Larkum ME, Sachdev RNS, 2022 eNeuro "Coordination between eye movement and whisking in head fixed mice navigating a plus-maze". This repository contains the DeepLabCut model to track (i) edges of the pupil, and (ii) the corners of the eye (not used in the later analysis).
License	Creative Commons 4.0 Attribution (https://creativecommons.org/licenses/by/4.0/)
References	Bergmann R, Sehara K, Dominiak SE, Kremkow J, Larkum ME, Sachdev RNS (2022) Coordination between eye movement and whisking in head fixed mice navigating a plus-maze. [https://doi.org/10.1523/ENEURO.0089-22.2022] (IsSupplementTo) Bergmann R, Sehara K, Dominiak SE, Colomb J, Kremkow J, Larkum ME, Sachdev RN (2022) Data for Bergmann, Sehara et al., 2022 eNeuro (eye-whisker coordination on Airtrack). G-Node. https://doi.org/10.12751/g-node.j9wxqe [https://doi.org/10.12751/g-node.j9wxqe] (IsPartOf) Bergmann R, Sehara K, Dominiak SE, Colomb J, Kremkow J, Larkum ME, Sachdev RN (2022) Raw data for Bergmann, Sehara et al., 2022 eNeuro (eye-whisker coordination on Airtrack). G-Node. https://doi.org/10.12751/g-node.g8f1jc [https://doi.org/10.12751/g-node.g8f1jc] (IsDerivedFrom) Bergmann R, Sehara K, Dominiak SE, Colomb J, Kremkow J, Larkum ME, Sachdev RN (2022) Eye-tracking data for Bergmann, Sehara et al., 2022 eNeuro (eye-whisker coordination on Airtrack). G-Node. https://doi.org/10.12751/g-node.5jz67s [https://doi.org/10.12751/g-node.5jz67s] (Compiles)
Funding	EU, EU.670118 EU, EU.327654276 EU, EU.720270 EU, EU.785907 EU, EU.945539 DFG, DFG.250048060 DFG, DFG.246731133 DFG, DFG.267823436
Keywords	Neuroscience Behavioral tracking Motor coordination Whiskers Pupil tracking Airtrack
Resource Type	Dataset

README.md

Eye-tracking model

How to use

License