The data repository for Bergmann, Sehara et al., 2022 (eye-whisker coordination on Airtrack). https://doi.org/10.1523/ENEURO.0089-22.2022

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Keisuke Sehara dbde12840c update datacite with temporary DOIs		%!s(int64=2) %!d(string=hai) anos
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datacite.yml	dbde12840c update datacite with temporary DOIs	%!s(int64=2) %!d(string=hai) anos

Bergmann, Sehara et al., 2022 Data Repository

The data repository for Bergmann R, Sehara K, Dominiak SE, Kremkow J, Larkum ME, Sachdev RNS (2022) Coordination between eye movement and whisking in head fixed mice navigating a plus-maze. eNeuro ENEURO.0089-22.2022 (eye-whisker coordination on Airtrack).

01_data: contains datasets used for this study. includes the experimental / analytical procedures used to generate data.
02_models: contains the computational model used for this study.
03_demos: some code demonstrating the usage of the datareader module, and the core part of our analysis.
04_analysis: code for generation of analysis figures.

Downloading the repository

The command below will download this repository.

$ gin get larkumlab/Bergmann_2022_DataRepository 
$ cd Bergmann_2022_DataRepository

# at this point, it will _not_ contain data under `01_data` and `02_models`.
# to download them all, run the command below
# in the "Bergmann_2022_DataRepository" directory:
$ git submodule update --init --recursive # downloads ~3 GiB of data

# some data files in the data sub-repositories will _not_ have
# their contents (i.e. "annexed").
# the command below will enable GIN commands (e.g. `gin get-content`)
# allowing content retrieval:
$ git submodule foreach --recursive 'gin init'

datacite.yml
Title	Data for Bergmann, Sehara et al., 2022 eNeuro (eye-whisker coordination on Airtrack)
Authors	Bergmann,Ronny;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany.;ORCID:0000-0002-1477-7502 Sehara,Keisuke;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany.;ORCID:0000-0003-4368-8143 Dominiak,Sina E.;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany. Colomb,Julien;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany.;ORCID:0000-0002-3127-5520 Kremkow,Jens;Charité–Universitätsmedizin Berlin, Berlin, 10117 Germany.;ORCID:0000-0001-7077-4528 Larkum,Matthew E.;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany.;ORCID:0000-0001-9799-2656 Sachdev,Robert N.S.;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany.;ORCID:0000-0002-6627-0199
Description	Data repository for Bergmann R, Sehara K, Dominiak SE, Kremkow J, Larkum ME, Sachdev RNS, 2022 eNeuro "Coordination between eye movement and whisking in head fixed mice navigating a plus-maze". This repository contains the raw and the formatted data, code for generating figures, and some demo code to work with analysis python modules.
License	Creative Commons 4.0 Attribution (https://creativecommons.org/licenses/by/4.0/)
References	Bergmann R, Sehara K, Dominiak SE, Kremkow J, Larkum ME, Sachdev RNS (2022) Coordination between eye movement and whisking in head fixed mice navigating a plus-maze. [https://doi.org/10.1523/ENEURO.0089-22.2022] (IsSupplementTo) Bergmann R, Sehara K, Dominiak SE, Kremkow J, Larkum ME, Sachdev RNS (2022) Raw data for Bergmann, Sehara et al., 2022 eNeuro (eye-whisker coordination on Airtrack) [https://doi.org/10.12751/g-node.g8f1jc] (HasPart) Bergmann R, Sehara K, Dominiak SE, Kremkow J, Larkum ME, Sachdev RNS (2022) Whisker-tracking data for Bergmann, Sehara et al., 2022 eNeuro (eye-whisker coordination on Airtrack) [https://doi.org/10.12751/g-node.s62hni] (HasPart) Bergmann R, Sehara K, Dominiak SE, Kremkow J, Larkum ME, Sachdev RNS (2022) Eye-tracking data for Bergmann, Sehara et al., 2022 eNeuro (eye-whisker coordination on Airtrack) [https://doi.org/10.12751/g-node.5jz67s] (HasPart) Bergmann R, Sehara K, Dominiak SE, Kremkow J, Larkum ME, Sachdev RNS (2022) Formatted data for Bergmann, Sehara et al., 2022 eNeuro (eye-whisker coordination on Airtrack) [https://doi.org/10.12751/g-node.hhxe3v] (HasPart) Bergmann R, Sehara K, Dominiak SE, Kremkow J, Larkum ME, Sachdev RNS (2022) DeepLabCut model repository for Bergmann, Sehara et al., 2022 eNeuro (eye-whisker coordination on Airtrack) [https://doi.org/10.12751/g-node.1kd2qf] (HasPart)
Funding	EU, EU.670118 EU, EU.327654276 EU, EU.720270 EU, EU.785907 EU, EU.945539 DFG, DFG.250048060 DFG, DFG.246731133 DFG, DFG.267823436
Keywords	Neuroscience Behavioral tracking Motor coordination Whiskers Pupil tracking Airtrack
Resource Type	Dataset

README.md

Bergmann, Sehara et al., 2022 Data Repository

Downloading the repository