Bergmann_2022_DataRepository/04_analysis

Analysis

The analysis code used in the study.

• 01_asymmetry: Plots and statistical analysis on whisker asymmetry and pupil positions under different behavioral states.
• 02a_prediction-analysis-ROC: ROC analysis of whisker asymmetry and pupil positions during the backward-running epoch.
• 02b_prediction-analysis-perceptron: Perceptron analysis of whisker asymmetry and pupil positions during the backward-running epoch.
• 03_saccades: Analysis of whisker asymmetry around saccades.

Dependencies

You will need Python ≥ 3.4 to run the code.

Package	Version used in the paper
numpy	1.18.1
scipy	1.4.1
matplotlib	3.1.3
statsmodels (used to run kw_dunn.py)	0.13.0
pandas	1.0.1
scikit-learn (only for 02b)	0.22.1
sliding1d	1.0

You can install all the packages via pip (assuming you have an appropriate version of python):

$ pip install numpy scipy matplotlib statsmodels pandas scikit-learn sliding1d

In case anything does not work, consider upgrading/downgrading the package that generates the error.

License

• kw_dunn.py is based on the one being shared at https://gist.github.com/alimuldal/fbb19b73fa25423f02e8 . The authors of this repository do not claim any copyright.
• For the other parts of the code (including packages and modules stored in this directory): so long as you cite {{the paper}} or this repository, you are free to reuse, remix, and/or redistribute for any purposes.