Scheduled service maintenance on November 22


On Friday, November 22, 2024, between 06:00 CET and 18:00 CET, GIN services will undergo planned maintenance. Extended service interruptions should be expected. We will try to keep downtimes to a minimum, but recommend that users avoid critical tasks, large data uploads, or DOI requests during this time.

We apologize for any inconvenience.

README.md 2.1 KB

Datasets

schematics of the flow of analysis

  • 01_raw: the raw data being analyzed:
    • top-view videos (top): AVI files taken at 200 Hz using ZR View (a custom video acquisition software) under the near-UV lighting, trial-based.
    • eye videos (left-eye and right-eye): AVI files taken at 100 Hz using PylonPD (a custom video acquisition software) under the IR-lighting, trial-based.
    • behavioral annotation (states): CSV files containing manual annotation of behavioral states based on the top-view videos, trial-based.
  • 02_whisker-tracking: whisker tracking data based on the top-view videos, using the videobatch python module:
    • maximal projections (projection): PNG files containing a maximal projection of top-view video frames from each single trial.
    • ROIs (ROI): PNG files representing the mask for ROIs generated from the maximal projection images. These ROIs were used for the subsequent tracking.
    • color-tracking mask videos (mask): MP4 files containing color masks generated by color-tracking procedure of videobatch.
    • tracked whisker positions (result): CSV files containing the center-of-mass positions of tracked whiskers (in pixels).
  • 03_eye-tracking: CSV files containing information about eye- and pupil-tracking based on the eye videos, using DeepLabCut and fitting2d.
  • 04_formatted: the data being used for analysis. Includes a set of videos where the eye videos and behavioral annotations are aligned and overlaid on top of the top-view videos (video quality is not so high).