|
@@ -0,0 +1,15 @@
|
|
|
+# Datasets
|
|
|
+
|
|
|
+![schematics of the flow of analysis](resources/datasets.png)
|
|
|
+
|
|
|
+- [01_raw](01_raw): the raw data being analyzed:
|
|
|
+ - **top-view videos** (`top`): AVI files taken at 200 Hz using ZR View (a custom video acquisition software) under the near-UV lighting, trial-based.
|
|
|
+ - **eye videos** (`left-eye` and `right-eye`): AVI files taken at 100 Hz using PylonPD (a custom video acquisition software) under the IR-lighting, trial-based.
|
|
|
+ - **behavioral annotation** (`states`): CSV files containing manual annotation of behavioral states based on the top-view videos, trial-based.
|
|
|
+- [02_whisker-tracking](02_whisker-tracking): whisker tracking data based on the top-view videos, using the [videobatch](https://doi.org/10.5281/zenodo.3407665) python module:
|
|
|
+ - **maximal projections** (`projection`): PNG files containing a maximal projection of top-view video frames from each single trial.
|
|
|
+ - **ROIs** (`ROI`): PNG files representing the mask for ROIs generated from the maximal projection images. These ROIs were used for the subsequent tracking.
|
|
|
+ - **color-tracking mask videos** (`mask`): MP4 files containing color masks generated by color-tracking procedure of [videobatch](https://doi.org/10.5281/zenodo.3407665).
|
|
|
+ - **tracked whisker positions** (`result`): CSV files containing the center-of-mass positions of tracked whiskers (in pixels).
|
|
|
+- [03_eye-tracking](03_eye-tracking): CSV files containing information about eye- and pupil-tracking based on the eye videos, using [DeepLabCut](https://doi.org/10.1038/s41593-018-0209-y) and [fitting2d](https://doi.org/10.5281/zenodo.3782789).
|
|
|
+- [04_formatted](04_formatted): the data being used for analysis. Includes a set of videos where the eye videos and behavioral annotations are aligned and overlaid on top of the top-view videos (video quality is not so high).
|