gin commit from Kristas-Mac-mini.local

New files: 238
Modified files: 78

README.md

@@ -1,3 +1,25 @@
 # Perks_Sawtell_2022
 
-Data (raw and processed) and scripts for "Neural readout of a latency code in the active electrosensory system" published 2022. Krista Perks and Nathaniel Sawtell.
+Data (raw and processed) and scripts for "Neural readout of a latency code in the active electrosensory system" published 2022. Krista Perks and Nathaniel Sawtell.
+
+This directory contains all materials needed to produce the Figures and results of the research article titled "Neural Readout of a Latency Code in the Active Electrosensory System" published in Cell Reports (also available on biorxiv at https://doi.org/10.1101/2021.12.14.472594).
+
+There are three subfolders:
+
+1. scripts
+All scripts are written in Python3. All python software used for analysis was obtained via the Anaconda Individual distribution. 
+
+For each of the main Figures in the publication, there is a separate jupyter notebook file (.ipynb) that can be used to recreate all figure panels (raw pdfs were created for each panel within each figure). All filepaths in these notebooks assume that you launched jupyter notebook (or jupyter lab) from within the Perks_Sawtell_2022 directory. If you launch python from a different location, the filepaths will need to be edited. Figure PDFs generated by these notebooks will be saved (if the 'saveas' lines are uncommented) in a folder named 'Perks_Sawtell_2022_FigureComponents' one level up from the location you launched the notebooks (for example, the location that you saved 'Perks_Sawtell_2022' onto your computer.  
+
+2. data_processed
+This folder (and subfolders) contains all processed data files that were created to increase the efficiency of data analysis (for example saving processed data in this way avoided re-processing the raw data everytime an edit needed to be made to a figure, or a different analysis needed to be done with the same raw data, etc). The scripts used to create all processed data files are located in the scripts folder (written and saved as either .py or .ipynb). 
+File formats in this folder include: yaml, pickle, csv, npy, xlsx, txt
+When running any of the model simulations on a different computer, the file 'grc_model_simulations/grc_model_simulations.pickle' will likely need to be deleted (the script will throw an error). Once deleted, the script will automatically regenerate this file. It should not need to be deleted again if re-running simulations on the same computer. 
+
+3. environments
+Anaconda environments exported as .yaml files from each of the computers used during the processing and analysis of the data for "Neural Readout of a Latency Code in the Active Electrosensory System" published in Cell Reports (also available on biorxiv at https://doi.org/10.1101/2021.12.14.472594). The operating system specs are named in the corresponding file names. Only Mac computers were used in the analysis and processing. Therefore, there are no environment files for a Windows PC in this folder. 
+
+
+**data_raw**
+This directory of files is zipped. 
+It contains all of the raw data needed to generate the processed data (using scripts in the scripts directory) used in the analysis and visualization of the results reported in "Neural Readout of a Latency Code in the Active Electrosensory System" published in Cell Reports (also available on biorxiv at https://doi.org/10.1101/2021.12.14.472594).

data_processed/Figure6Data/test.txt

@@ -0,0 +1,182 @@
+"Time"	"1 highgain"	"SEM"
+0.007950	-0.289973	0.0121399
+0.008000	-0.310146	0.0119515
+0.008050	-0.323789	0.0118819
+0.008100	-0.338869	0.0118791
+0.008150	-0.362464	0.0117248
+0.008200	-0.40263	0.0116712
+0.008250	-0.430792	0.011889
+0.008300	-0.455654	0.0118267
+0.008350	-0.479451	0.0118028
+0.008400	-0.497223	0.0118664
+0.008450	-0.500354	0.0118678
+0.008500	-0.498839	0.0119328
+0.008550	-0.51495	0.0120332
+0.008600	-0.551628	0.0118364
+0.008650	-0.579576	0.0118325
+0.008700	-0.589887	0.0120014
+0.008750	-0.600826	0.0124349
+0.008800	-0.641531	0.0132264
+0.008850	-0.746222	0.0137594
+0.008900	-0.887422	0.0129267
+0.008950	-0.988837	0.0123948
+0.009000	-1.02436	0.0128631
+0.009050	-1.01319	0.0127162
+0.009100	-0.986694	0.0125012
+0.009150	-0.968754	0.0121306
+0.009200	-0.947851	0.0120046
+0.009250	-0.922315	0.0120356
+0.009300	-0.901626	0.0117922
+0.009350	-0.882452	0.0114802
+0.009400	-0.859923	0.0112386
+0.009450	-0.838919	0.0113301
+0.009500	-0.81703	0.011472
+0.009550	-0.8002	0.0113419
+0.009600	-0.794198	0.0115248
+0.009650	-0.791292	0.0116138
+0.009700	-0.781171	0.0117161
+0.009750	-0.76598	0.0115799
+0.009800	-0.751383	0.0117388
+0.009850	-0.734789	0.0119131
+0.009900	-0.711239	0.0120296
+0.009950	-0.687498	0.0122036
+0.010000	-0.663914	0.012256
+0.010050	-0.640005	0.0124039
+0.010100	-0.619989	0.0122482
+0.010150	-0.610026	0.012027
+0.010200	-0.612977	0.0122678
+0.010250	-0.631209	0.0123911
+0.010300	-0.645323	0.0125219
+0.010350	-0.64456	0.0126876
+0.010400	-0.629347	0.0127865
+0.010450	-0.606873	0.0127068
+0.010500	-0.584984	0.0126586
+0.010550	-0.563487	0.0126359
+0.010600	-0.542102	0.012902
+0.010650	-0.523702	0.0133359
+0.010700	-0.508544	0.0133718
+0.010750	-0.502687	0.0133828
+0.010800	-0.501532	0.0135365
+0.010850	-0.49885	0.0137432
+0.010900	-0.499501	0.0138446
+0.010950	-0.502014	0.0135613
+0.011000	-0.507052	0.0133087
+0.011050	-0.508207	0.0133792
+0.011100	-0.505358	0.0138733
+0.011150	-0.489751	0.0139973
+0.011200	-0.470251	0.013941
+0.011250	-0.449472	0.0140632
+0.011300	-0.432497	0.0139253
+0.011350	-0.416307	0.0139614
+0.011400	-0.401878	0.0143823
+0.011450	-0.389009	0.0145392
+0.011500	-0.376915	0.0144314
+0.011550	-0.363305	0.0142281
+0.011600	-0.349662	0.0139739
+0.011650	-0.335065	0.0138544
+0.011700	-0.316777	0.0133249
+0.011750	-0.298668	0.0132547
+0.011800	-0.279258	0.0129358
+0.011850	-0.261441	0.0127573
+0.011900	-0.243927	0.0126012
+0.011950	-0.230037	0.0124491
+0.012000	-0.221039	0.0123796
+0.012050	-0.213174	0.0126246
+0.012100	-0.210145	0.0128435
+0.012150	-0.206386	0.0130559
+0.012200	-0.202291	0.0131258
+0.012250	-0.199004	0.0133853
+0.012300	-0.195313	0.0135497
+0.012350	-0.18747	0.0135946
+0.012400	-0.179594	0.0135812
+0.012450	-0.17294	0.0134417
+0.012500	-0.16769	0.0133024
+0.012550	-0.162495	0.0130979
+0.012600	-0.15463	0.0127925
+0.012650	-0.148078	0.0125534
+0.012700	-0.144633	0.0125137
+0.012750	-0.141907	0.0124755
+0.012800	-0.136476	0.0125538
+0.012850	-0.130911	0.0126014
+0.012900	-0.126996	0.0123229
+0.012950	-0.123843	0.0122697
+0.013000	-0.12004	0.0121336
+0.013050	-0.119019	0.012067
+0.013100	-0.11995	0.0121058
+0.013150	-0.117392	0.0123105
+0.013200	-0.114003	0.012388
+0.013250	-0.113532	0.0125568
+0.013300	-0.113914	0.0125242
+0.013350	-0.114699	0.0125203
+0.013400	-0.113263	0.0125626
+0.013450	-0.112074	0.0126629
+0.013500	-0.110828	0.0126727
+0.013550	-0.105645	0.0126228
+0.013600	-0.103591	0.0125469
+0.013650	-0.102099	0.0125413
+0.013700	-0.0998104	0.0126832
+0.013750	-0.0978133	0.0126517
+0.013800	-0.0974992	0.0126443
+0.013850	-0.0969718	0.0127084
+0.013900	-0.0954011	0.0126501
+0.013950	-0.0937855	0.0126556
+0.014000	-0.0931011	0.0126112
+0.014050	-0.0917322	0.0126516
+0.014100	-0.0908796	0.0126727
+0.014150	-0.0923157	0.0127857
+0.014200	-0.0924167	0.0127282
+0.014250	-0.0908459	0.0126466
+0.014300	-0.0881644	0.0126592
+0.014350	-0.0847424	0.0127207
+0.014400	-0.0828462	0.0129409
+0.014450	-0.0816121	0.0128128
+0.014500	-0.0796374	0.0128385
+0.014550	-0.0805799	0.0127496
+0.014600	-0.0827004	0.0127996
+0.014650	-0.0815672	0.0128021
+0.014700	-0.0802433	0.0126777
+0.014750	-0.0812643	0.0124859
+0.014800	-0.0805013	0.0124335
+0.014850	-0.0804789	0.0124595
+0.014900	-0.0802433	0.0127446
+0.014950	-0.0799628	0.0126486
+0.015000	-0.0797945	0.0127422
+0.015050	-0.079514	0.0126265
+0.015100	-0.0798618	0.0125968
+0.015150	-0.0792672	0.0126251
+0.015200	-0.078953	0.0126874
+0.015250	-0.0791662	0.0128444
+0.015300	-0.0779657	0.0129672
+0.015350	-0.0782125	0.012826
+0.015400	-0.0779432	0.0127191
+0.015450	-0.078392	0.0128185
+0.015500	-0.0797945	0.0129162
+0.015550	-0.0790091	0.0128743
+0.015600	-0.0781676	0.0128462
+0.015650	-0.07589	0.0127124
+0.015700	-0.0744315	0.0127401
+0.015750	-0.0727822	0.0125612
+0.015800	-0.0716826	0.0124263
+0.015850	-0.0721202	0.0124135
+0.015900	-0.0724344	0.0125632
+0.015950	-0.0743754	0.0125059
+0.016000	-0.0745212	0.0124759
+0.016050	-0.0749476	0.0125694
+0.016100	-0.0752842	0.012656
+0.016150	-0.0755086	0.0126261
+0.016200	-0.0755422	0.0125817
+0.016250	-0.0764174	0.0125296
+0.016300	-0.0757442	0.0124851
+0.016350	-0.0762827	0.0126787
+0.016400	-0.079312	0.0125224
+0.016450	-0.079155	0.0122778
+0.016500	-0.0782574	0.0122553
+0.016550	-0.0776852	0.0122986
+0.016600	-0.0780891	0.0124097
+0.016650	-0.0778423	0.0123901
+0.016700	-0.0778086	0.0123686
+0.016750	-0.0784257	0.0122204
+0.016800	-0.0797945	0.0121956
+0.016850	-0.0791662	0.0122242
+0.016900	-0.078695	0.0121857
+0.016950	-0.0786276	0.0121002

data_processed/GRC_properties_Meta/cell_data_uncoupled.csv

@@ -0,0 +1,25 @@
+20200606_005,[-63.98898  -63.983208 -63.98114  ... -63.89164  -63.8935   -63.892677]
+20200606_001,[-69.313866 -69.30939  -69.307144 ... -68.60337  -68.602135 -68.60376 ]
+20200607_005,[-58.856293 -58.879627 -58.87918  ... -59.51152  -59.51556  -59.51511 ]
+20200607_004,[-54.38152  -54.379112 -54.384735 ... -55.20148  -55.200676 -55.192646]
+20200607_002,[-58.729603 -58.727142 -58.732063 ... -59.07662  -59.065296 -59.056435]
+20200607_000,[-62.588684 -62.592205 -62.575977 ... -61.852783 -61.84609  -61.841015]
+20200525_001,[-64.36287 -64.36656 -64.36435 ... -64.75007 -64.7561  -64.747  ]
+20200525_006,[-60.02188  -60.021202 -60.017895 ... -60.314007 -60.313553 -60.322876]
+20200524_002,[-71.89344  -71.89044  -71.88748  ... -66.96005  -66.965866 -66.97846 ]
+20200312_002,[-56.64131  -56.641026 -56.63883  ... -56.703335 -56.70886  -56.70402 ]
+20200227_000,[-49.57149  -49.57172  -49.573128 ... -50.071075 -50.07073  -50.071438]
+20200226_002,[-58.0878   -58.08861  -58.08338  ... -58.5303   -58.531906 -58.536736]
+20200225_000,[-60.54535  -60.52704  -60.533142 ... -60.902405 -60.91461  -60.910034]
+20200115_002,[-53.149387 -53.150253 -53.146175 ... -53.20203  -53.201595 -53.20393 ]
+20200113_003,[-51.432102 -51.425728 -51.42629  ... -51.366905 -51.36718  -51.36719 ]
+20200113_004,[-39.493313 -39.495472 -39.499733 ... -40.955173 -40.957787 -40.95861 ]
+20191218_005,[-50.579002 -50.57784  -50.578888 ... -50.880962 -50.877117 -50.877533]
+20191218_009,[-62.817467 -62.81917  -62.820007 ... -62.926857 -62.926556 -62.9277  ]
+20200122_001,[-63.135017 -63.13526  -63.13476  ... -63.023136 -63.020073 -63.01854 ]
+20200115_004,[-63.555096 -63.560936 -63.559593 ... -63.7584   -63.750774 -63.75795 ]
+20200312_000,[-65.078735 -65.0602   -65.052574 ... -64.411705 -64.41498  -64.39536 ]
+20200309_000,[-66.436966 -66.43551  -66.431465 ... -66.09423  -66.067856 -66.05936 ]
+20200122_002,[-66.61818  -66.61323  -66.61337  ... -63.924732 -63.924583 -63.924004]
+20200121_006,[-61.885338 -61.891766 -61.897285 ... -64.70049  -64.70069  -64.7002  ]
+20200109_004,[-52.782696 -52.78778  -52.794773 ... -53.34091  -53.337097 -53.331375]

data_processed/GRC_properties_Meta/cell_data_uncoupled.txt

@@ -0,0 +1,26 @@
+{'20200606_005': array([-63.98898 , -63.983208, -63.98114 , ..., -63.89164 , -63.8935  ,
+       -63.892677], dtype=float32), '20200606_001': array([-69.313866, -69.30939 , -69.307144, ..., -68.60337 , -68.602135,
+       -68.60376 ], dtype=float32), '20200607_005': array([-58.856293, -58.879627, -58.87918 , ..., -59.51152 , -59.51556 ,
+       -59.51511 ], dtype=float32), '20200607_004': array([-54.38152 , -54.379112, -54.384735, ..., -55.20148 , -55.200676,
+       -55.192646], dtype=float32), '20200607_002': array([-58.729603, -58.727142, -58.732063, ..., -59.07662 , -59.065296,
+       -59.056435], dtype=float32), '20200607_000': array([-62.588684, -62.592205, -62.575977, ..., -61.852783, -61.84609 ,
+       -61.841015], dtype=float32), '20200525_001': array([-64.36287, -64.36656, -64.36435, ..., -64.75007, -64.7561 ,
+       -64.747  ], dtype=float32), '20200525_006': array([-60.02188 , -60.021202, -60.017895, ..., -60.314007, -60.313553,
+       -60.322876], dtype=float32), '20200524_002': array([-71.89344 , -71.89044 , -71.88748 , ..., -66.96005 , -66.965866,
+       -66.97846 ], dtype=float32), '20200312_002': array([-56.64131 , -56.641026, -56.63883 , ..., -56.703335, -56.70886 ,
+       -56.70402 ], dtype=float32), '20200227_000': array([-49.57149 , -49.57172 , -49.573128, ..., -50.071075, -50.07073 ,
+       -50.071438], dtype=float32), '20200226_002': array([-58.0878  , -58.08861 , -58.08338 , ..., -58.5303  , -58.531906,
+       -58.536736], dtype=float32), '20200225_000': array([-60.54535 , -60.52704 , -60.533142, ..., -60.902405, -60.91461 ,
+       -60.910034], dtype=float32), '20200115_002': array([-53.149387, -53.150253, -53.146175, ..., -53.20203 , -53.201595,
+       -53.20393 ], dtype=float32), '20200113_003': array([-51.432102, -51.425728, -51.42629 , ..., -51.366905, -51.36718 ,
+       -51.36719 ], dtype=float32), '20200113_004': array([-39.493313, -39.495472, -39.499733, ..., -40.955173, -40.957787,
+       -40.95861 ], dtype=float32), '20191218_005': array([-50.579002, -50.57784 , -50.578888, ..., -50.880962, -50.877117,
+       -50.877533], dtype=float32), '20191218_009': array([-62.817467, -62.81917 , -62.820007, ..., -62.926857, -62.926556,
+       -62.9277  ], dtype=float32), '20200122_001': array([-63.135017, -63.13526 , -63.13476 , ..., -63.023136, -63.020073,
+       -63.01854 ], dtype=float32), '20200115_004': array([-63.555096, -63.560936, -63.559593, ..., -63.7584  , -63.750774,
+       -63.75795 ], dtype=float32), '20200312_000': array([-65.078735, -65.0602  , -65.052574, ..., -64.411705, -64.41498 ,
+       -64.39536 ], dtype=float32), '20200309_000': array([-66.436966, -66.43551 , -66.431465, ..., -66.09423 , -66.067856,
+       -66.05936 ], dtype=float32), '20200122_002': array([-66.61818 , -66.61323 , -66.61337 , ..., -63.924732, -63.924583,
+       -63.924004], dtype=float32), '20200121_006': array([-61.885338, -61.891766, -61.897285, ..., -64.70049 , -64.70069 ,
+       -64.7002  ], dtype=float32), '20200109_004': array([-52.782696, -52.78778 , -52.794773, ..., -53.34091 , -53.337097,
+       -53.331375], dtype=float32)}

data_processed/GRC_properties_Meta/time_data_uncoupled.txt

@@ -0,0 +1,26 @@
+{'20200606_005': array([0.00000000e+00, 2.00053348e-02, 4.00106695e-02, ...,
+       7.49599893e+01, 7.49799947e+01, 7.50000000e+01]), '20200606_001': array([0.00000000e+00, 2.00053348e-02, 4.00106695e-02, ...,
+       7.49599893e+01, 7.49799947e+01, 7.50000000e+01]), '20200607_005': array([0.00000000e+00, 5.00667557e-02, 1.00133511e-01, ...,
+       7.48998665e+01, 7.49499332e+01, 7.50000000e+01]), '20200607_004': array([0.00000000e+00, 5.00667557e-02, 1.00133511e-01, ...,
+       7.48998665e+01, 7.49499332e+01, 7.50000000e+01]), '20200607_002': array([0.00000000e+00, 5.00667557e-02, 1.00133511e-01, ...,
+       7.48998665e+01, 7.49499332e+01, 7.50000000e+01]), '20200607_000': array([0.00000000e+00, 5.00667557e-02, 1.00133511e-01, ...,
+       7.48998665e+01, 7.49499332e+01, 7.50000000e+01]), '20200525_001': array([0.00000000e+00, 2.00053348e-02, 4.00106695e-02, ...,
+       7.49599893e+01, 7.49799947e+01, 7.50000000e+01]), '20200525_006': array([0.00000000e+00, 2.00053348e-02, 4.00106695e-02, ...,
+       7.49599893e+01, 7.49799947e+01, 7.50000000e+01]), '20200524_002': array([0.00000000e+00, 2.00053348e-02, 4.00106695e-02, ...,
+       7.49599893e+01, 7.49799947e+01, 7.50000000e+01]), '20200312_002': array([0.00000000e+00, 2.00053348e-02, 4.00106695e-02, ...,
+       7.49599893e+01, 7.49799947e+01, 7.50000000e+01]), '20200227_000': array([0.00000000e+00, 2.00053348e-02, 4.00106695e-02, ...,
+       7.49599893e+01, 7.49799947e+01, 7.50000000e+01]), '20200226_002': array([0.00000000e+00, 2.00053348e-02, 4.00106695e-02, ...,
+       7.49599893e+01, 7.49799947e+01, 7.50000000e+01]), '20200225_000': array([0.00000000e+00, 2.00053348e-02, 4.00106695e-02, ...,
+       7.49599893e+01, 7.49799947e+01, 7.50000000e+01]), '20200115_002': array([0.00000000e+00, 2.50166778e-02, 5.00333556e-02, ...,
+       7.49499666e+01, 7.49749833e+01, 7.50000000e+01]), '20200113_003': array([0.00000000e+00, 2.50166778e-02, 5.00333556e-02, ...,
+       7.49499666e+01, 7.49749833e+01, 7.50000000e+01]), '20200113_004': array([0.00000000e+00, 2.50166778e-02, 5.00333556e-02, ...,
+       7.49499666e+01, 7.49749833e+01, 7.50000000e+01]), '20191218_005': array([0.00000000e+00, 2.50166778e-02, 5.00333556e-02, ...,
+       7.49499666e+01, 7.49749833e+01, 7.50000000e+01]), '20191218_009': array([0.00000000e+00, 2.50166778e-02, 5.00333556e-02, ...,
+       7.49499666e+01, 7.49749833e+01, 7.50000000e+01]), '20200122_001': array([0.00000000e+00, 2.50166778e-02, 5.00333556e-02, ...,
+       7.49499666e+01, 7.49749833e+01, 7.50000000e+01]), '20200115_004': array([0.00000000e+00, 2.50166778e-02, 5.00333556e-02, ...,
+       7.49499666e+01, 7.49749833e+01, 7.50000000e+01]), '20200312_000': array([0.00000000e+00, 2.00053348e-02, 4.00106695e-02, ...,
+       7.49599893e+01, 7.49799947e+01, 7.50000000e+01]), '20200309_000': array([0.00000000e+00, 2.00053348e-02, 4.00106695e-02, ...,
+       7.49599893e+01, 7.49799947e+01, 7.50000000e+01]), '20200122_002': array([0.00000000e+00, 2.50166778e-02, 5.00333556e-02, ...,
+       7.49499666e+01, 7.49749833e+01, 7.50000000e+01]), '20200121_006': array([0.00000000e+00, 2.50166778e-02, 5.00333556e-02, ...,
+       7.49499666e+01, 7.49749833e+01, 7.50000000e+01]), '20200109_004': array([0.00000000e+00, 2.50166778e-02, 5.00333556e-02, ...,
+       7.49499666e+01, 7.49749833e+01, 7.50000000e+01])}

data_processed/Vm_offset_metadata.yaml

@@ -0,0 +1,60 @@
+- '20170206_003': -3
+  '20170502_002': -4
+  '20170912_003': -4
+  '20170912_005': -7
+  '20171010_000': -4
+  '20171010_002': -9
+  '20171010_003': -8
+  '20171010_005': -3
+  '20171010_006': -4
+  '20171011_001': -5
+  '20171027_000': -6
+  '20171031_004': -6
+  '20171107_002': -5
+  '20180103_001': -4
+  '20180103_003': -5
+  '20180105_000': -4
+  '20180108_001': -7
+  '20180108_004': -4
+  '20180112_003': -5
+  '20180122_001': -4
+  '20180122_002': -4
+  '20180130_000': -7
+  '20181213_002': 1
+  '20190102_000': 0
+  '20190104_000': 5
+  '20190107_000': 3
+  '20190107_003': 1
+  '20190110_000': 5
+  '20190128_001': -4
+  '20190227_001': -2
+  '20190312_005': 3
+  '20190325_002': 2
+  '20191218_005': 0
+  '20191218_007': -1
+  '20191218_009': 2
+  '20200109_004': 0
+  '20200113_003': -3
+  '20200113_004': 2
+  '20200115_002': -4
+  '20200115_004': -1
+  '20200121_006': 4
+  '20200122_001': -3
+  '20200122_002': 0
+  '20200225_000': -1
+  '20200226_002': -3
+  '20200227_000': -1
+  '20200303_000': 4
+  '20200309_000': 1
+  '20200309_001': 2
+  '20200312_000': 0
+  '20200312_002': 0
+  '20200524_002': -1
+  '20200525_001': -1.5
+  '20200525_006': 3
+  '20200606_001': -2
+  '20200606_005': -2
+  '20200607_000': -1
+  '20200607_002': 0
+  '20200607_004': 3
+  '20200607_005': 0

data_processed/all_expt_metadata.yaml

@@ -0,0 +1,58 @@
+- '20200129_002': '[expt.get_bout_win("N","Keyboard")[0]]'
+  '20200129_003': '[expt.get_bout_win("N","Keyboard")[0]]'
+  '20200129_004': '[expt.get_bout_win("N","Keyboard")[0]]'
+  '20200129_005': '[expt.get_bout_win("N","Keyboard")[0]]'
+  '20200129_006': '[expt.get_bout_win("N","Keyboard")[0]]'
+  '20200129_007': '[expt.get_bout_win("N","Keyboard")[0]]'
+  '20200129_008': '[expt.get_bout_win("N","Keyboard")[0]]'
+  '20200129_009': '[expt.get_bout_win("N","Keyboard")[0]]'
+  '20200129_010': '[expt.get_bout_win("N","Keyboard")[0]]'
+  '20200129_011': '[expt.get_bout_win("N","Keyboard")[0]]'
+  '20200129_012': '[expt.get_bout_win("N","Keyboard")[0]]'
+  '20200204_000': '[expt.get_bout_win("N","Keyboard")[0]]'
+  '20200204_002': '[expt.get_bout_win("N","Keyboard")[0]]'
+  '20200204_003': '[expt.get_bout_win("N","Keyboard")[0]]'
+  '20200204_004': '[expt.get_bout_win("N","Keyboard")[0]]'
+  '20200204_005': '[expt.get_bout_win("N","Keyboard")[0]]'
+  '20200204_006': '[expt.get_bout_win("N","Keyboard")[0]]'
+  '20200204_007': '[expt.get_bout_win("N","Keyboard")[0],expt.get_bout_win("N","Keyboard")[1]]'
+  '20200204_008': '[expt.get_bout_win("N","Keyboard")[0]]'
+  '20200204_009': '[expt.get_bout_win("N","Keyboard")[0]]'
+  '20200204_010': '[expt.get_bout_win("N","Keyboard")[0]]'
+  '20200204_011': '[expt.get_bout_win("N","Keyboard")[0]]'
+  '20200531_001': '[expt.get_bout_win("R","Keyboard")[1]]'
+  '20200531_002': '[expt.get_bout_win("R","Keyboard")[0]]'
+  '20200531_004': '[expt.get_bout_win("R","Keyboard")[1]]'
+  '20200531_005': '[expt.get_bout_win("R","Keyboard")[0]]'
+  '20200531_006': '[expt.get_bout_win("R","Keyboard")[1]]'
+  '20200531_007': '[expt.get_bout_win("R","Keyboard")[1]]'
+  '20200531_008': '[expt.get_bout_win("R","Keyboard")[0]]'
+  '20200531_009': '[expt.get_bout_win("R","Keyboard")[0]]'
+  '20200531_010': '[expt.get_bout_win("R","Keyboard")[0]]'
+  '20200531_011': '[expt.get_bout_win("R","Keyboard")[1]]'
+  '20200531_012': '[expt.get_bout_win("R","Keyboard")[0]]'
+  '20200531_013': '[expt.get_bout_win("R","Keyboard")[0]]'
+  '20200531_014': '[expt.get_bout_win("R","Keyboard")[1]]'
+  '20200531_015': '[expt.get_bout_win("R","Keyboard")[1]]'
+  '20200531_016': '[expt.get_bout_win("R","Keyboard")[0]]'
+  '20200531_017': '[expt.get_bout_win("R","Keyboard")[2]]'
+  '20200531_018': '[expt.get_bout_win("R","Keyboard")[0]]'
+  '20200531_019': '[expt.get_bout_win("R","Keyboard")[0]]'
+  '20200531_020': '[expt.get_bout_win("R","Keyboard")[1]]'
+  '20200531_021': '[expt.get_bout_win("R","Keyboard")[1]]'
+  '20200531_022': '[expt.get_bout_win("R","Keyboard")[1]]'
+  '20200531_023': '[expt.get_bout_win("R","Keyboard")[1]]'
+  '20200531_024': '[expt.get_bout_win("R","Keyboard")[0]]'
+  '20200531_025': '[expt.get_bout_win("R","Keyboard")[0]]'
+  '20200531_026': '[expt.get_bout_win("R","Keyboard")[0]]'
+  '20200621_000': '[expt.get_bout_win("R","Keyboard")[0]]'
+  '20200621_001': '[expt.get_bout_win("R","Keyboard")[0]]'
+  '20200621_002': '[expt.get_bout_win("R","Keyboard")[0]]'
+  '20200621_005': '[expt.get_bout_win("R","Keyboard")[0]]'
+  '20200621_006': '[expt.get_bout_win("R","Keyboard")[0]]'
+  '20200621_008': '[expt.get_bout_win("R","Keyboard")[0]]'
+  '20200621_009': '[expt.get_bout_win("R","Keyboard")[0]]'
+  '20200621_011': '[expt.get_bout_win("R","Keyboard")[0]]'
+  '20200621_013': '[expt.get_bout_win("R","Keyboard")[0]]'
+  '20200621_015': '[expt.get_bout_win("R","Keyboard")[0]]'
+  '20200621_016': '[expt.get_bout_win("R","Keyboard")[0]]'

data_processed/cell_type_metadata.yaml

@@ -0,0 +1,65 @@
+- '20170206_003': s
+  '20170502_002': s
+  '20170912_003': s
+  '20170912_005': s
+  20170912_005_bout2: s
+  '20171010_000': m
+  '20171010_002': d
+  '20171010_003': m
+  '20171010_005': d
+  '20171010_006': s
+  '20171011_001': d
+  '20171027_000': o
+  '20171031_004': s
+  20171031_004_hyperpolarized: s
+  '20171107_002': d
+  '20180103_001': s
+  20180103_001_bout2: s
+  '20180103_003': s
+  '20180105_000': m
+  '20180108_001': m
+  '20180108_004': s
+  20180108_004_hyperpolarized: s
+  '20180112_003': m
+  '20180122_001': s
+  20180122_001_hyperpolarized: s
+  '20180122_002': d
+  '20180130_000': s
+  '20181213_002': d
+  '20190102_000': s
+  '20190104_000': d
+  '20190107_000': s
+  '20190107_003': d
+  '20190110_000': d
+  '20190128_001': d
+  '20190227_001': d
+  '20190312_005': d
+  '20190325_002': s
+  '20191218_005': d
+  '20191218_007': s
+  '20191218_009': d
+  '20200109_004': s
+  '20200113_003': d
+  '20200113_004': d
+  '20200115_002': d
+  '20200115_004': d
+  '20200121_006': o
+  '20200122_001': d
+  '20200122_002': s
+  '20200225_000': d
+  '20200226_002': d
+  '20200227_000': d
+  '20200303_000': m
+  '20200309_000': s
+  '20200309_001': m
+  '20200312_000': d
+  '20200312_002': d
+  '20200524_002': s
+  '20200525_001': d
+  '20200525_006': d
+  '20200606_001': s
+  '20200606_005': d
+  '20200607_000': s
+  '20200607_002': d
+  '20200607_004': d
+  '20200607_005': d

data_processed/df_GRC_properties/20170206_003.csv

@@ -0,0 +1,2 @@
+,exptname,Vm_baseline,c_latency,cmd_epsp_t,cmd_epsp_amp,cmd_epsp_onset,cmd_ipsp_t,cmd_ipsp_amp,cmd_ipsp_onset,cmd_response_std,cmd_peak_std,cmd_epsp_hw,cmd_epsp_dvdt,cmd_ipsp_dvdt,u_epsp_t,u_epsp_amp,u_epsp_onset,u_ipsp_t,u_ipsp_amp,u_ipsp_onset,u_response_std,u_peak_std,u_epsp_hw,u_epsp_dvdt,u_ipsp_dvdt,c_epsp_t,c_epsp_amp,c_epsp_onset,c_ipsp_t,c_ipsp_amp,c_ipsp_onset,c_response_std,c_peak_std,c_epsp_hw,c_epsp_dvdt,c_ipsp_dvdt
+0,20170206_003,-67.62565,0.0042824999999879765,29.064587973273944,13.668724,12.878619153674832,12.678173719376392,-5.933647,4.961024498886414,3.1747236,3.0898955,27.150000000000002,1.97845458984375,-2.315521240234375,8.769487750556793,8.865963,5.361915367483297,,,,4.335491,2.400827,38.05,3.7866973876953125,,8.669265033407573,14.914608,5.361915367483297,,,,4.5695944,3.7102985,13.000000000000002,6.243133544921875,

data_processed/df_GRC_properties/20170502_002.csv

@@ -0,0 +1,2 @@
+,exptname,Vm_baseline,c_latency,cmd_epsp_t,cmd_epsp_amp,cmd_epsp_onset,cmd_ipsp_t,cmd_ipsp_amp,cmd_ipsp_onset,cmd_response_std,cmd_peak_std,cmd_epsp_hw,cmd_epsp_dvdt,cmd_ipsp_dvdt,u_epsp_t,u_epsp_amp,u_epsp_onset,u_ipsp_t,u_ipsp_amp,u_ipsp_onset,u_response_std,u_peak_std,u_epsp_hw,u_epsp_dvdt,u_ipsp_dvdt,c_epsp_t,c_epsp_amp,c_epsp_onset,c_ipsp_t,c_ipsp_amp,c_ipsp_onset,c_response_std,c_peak_std,c_epsp_hw,c_epsp_dvdt,c_ipsp_dvdt
+0,20170502_002,-60.262974,0.004279999999994288,11.876391982182628,0.52288437,10.07238307349666,9.471046770601337,-3.8211403,5.612472160356347,1.1236353,0.7027158,10.350000000000001,0.2982330322265625,-1.783447265625,15.785077951002226,13.715187,6.664810690423162,,,,1.9740103,1.7438353,26.75,3.1797027587890625,,15.785077951002226,21.375309,6.464365256124722,,,,1.9536045,2.1820943,21.6,4.8818206787109375,

data_processed/df_GRC_properties/20171010_003_hyperpolarized.csv

@@ -0,0 +1,2 @@
+,exptname,Vm_baseline,c_latency,cmd_epsp_t,cmd_epsp_amp,cmd_epsp_onset,cmd_ipsp_t,cmd_ipsp_amp,cmd_ipsp_onset,cmd_response_std,cmd_peak_std,cmd_epsp_hw,cmd_epsp_dvdt,cmd_ipsp_dvdt,u_epsp_t,u_epsp_amp,u_epsp_onset,u_ipsp_t,u_ipsp_amp,u_ipsp_onset,u_response_std,u_peak_std,u_epsp_hw,u_epsp_dvdt,u_ipsp_dvdt,c_epsp_t,c_epsp_amp,c_epsp_onset,c_ipsp_t,c_ipsp_amp,c_ipsp_onset,c_response_std,c_peak_std,c_epsp_hw,c_epsp_dvdt,c_ipsp_dvdt
+0,20171010_003,-120.97752,0.004264999999975316,7.9677060133630295,11.9357605,4.309576837416482,,,,0.69693476,0.8678237,8.95,5.45928955078125,,4.560133630289532,5.683899,2.05456570155902,,,,0.35510483,0.4136045,41.85,3.39508056640625,,4.610244988864142,8.990578,2.05456570155902,,,,0.72635496,1.1747957,3.6,4.42291259765625,

data_processed/df_GRC_properties/20171010_005.csv

@@ -0,0 +1,2 @@
+,exptname,Vm_baseline,c_latency,cmd_epsp_t,cmd_epsp_amp,cmd_epsp_onset,cmd_ipsp_t,cmd_ipsp_amp,cmd_ipsp_onset,cmd_response_std,cmd_peak_std,cmd_epsp_hw,cmd_epsp_dvdt,cmd_ipsp_dvdt,u_epsp_t,u_epsp_amp,u_epsp_onset,u_ipsp_t,u_ipsp_amp,u_ipsp_onset,u_response_std,u_peak_std,u_epsp_hw,u_epsp_dvdt,u_ipsp_dvdt,c_epsp_t,c_epsp_amp,c_epsp_onset,c_ipsp_t,c_ipsp_amp,c_ipsp_onset,c_response_std,c_peak_std,c_epsp_hw,c_epsp_dvdt,c_ipsp_dvdt
+0,20171010_005,-65.52931,0.00430250000000143,8.819599109131403,5.36615,5.412026726057907,,,,0.31515402,0.25982827,13.85,2.728424072265625,,7.1158129175946545,7.6681023,3.708240534521158,31.92093541202673,-7.2691193,7.416481069042316,0.42375383,0.2861012,7.000000000000001,3.513031005859375,0.0,6.614699331848552,8.01487,3.7583518930957682,20.29510022271715,-8.012699,7.015590200445434,0.33769885,0.600404,4.1499999999999995,3.4581756591796875,0.0

data_processed/df_GRC_properties/20171010_006.csv

@@ -0,0 +1,2 @@
+,exptname,Vm_baseline,c_latency,cmd_epsp_t,cmd_epsp_amp,cmd_epsp_onset,cmd_ipsp_t,cmd_ipsp_amp,cmd_ipsp_onset,cmd_response_std,cmd_peak_std,cmd_epsp_hw,cmd_epsp_dvdt,cmd_ipsp_dvdt,u_epsp_t,u_epsp_amp,u_epsp_onset,u_ipsp_t,u_ipsp_amp,u_ipsp_onset,u_response_std,u_peak_std,u_epsp_hw,u_epsp_dvdt,u_ipsp_dvdt,c_epsp_t,c_epsp_amp,c_epsp_onset,c_ipsp_t,c_ipsp_amp,c_ipsp_onset,c_response_std,c_peak_std,c_epsp_hw,c_epsp_dvdt,c_ipsp_dvdt
+0,20171010_006,-50.25172,0.004292499999994703,10.2728285077951,0.3037262,8.919821826280623,8.06792873051225,-4.0091286,4.760579064587973,2.0977275,1.2479762,8.85,0.2312469482421875,0.0,9.320712694877507,8.481705,4.10913140311804,12.427616926503342,-0.91443634,9.721603563474387,1.3581578,1.7721943,31.900000000000006,2.33245849609375,0.0,14.1815144766147,20.340258,3.9086859688195994,,,,1.8975645,2.268015,25.900000000000002,3.507080078125,

data_processed/df_GRC_properties/20171011_001.csv

@@ -0,0 +1,2 @@
+,exptname,Vm_baseline,c_latency,cmd_epsp_t,cmd_epsp_amp,cmd_epsp_onset,cmd_ipsp_t,cmd_ipsp_amp,cmd_ipsp_onset,cmd_response_std,cmd_peak_std,cmd_epsp_hw,cmd_epsp_dvdt,cmd_ipsp_dvdt,u_epsp_t,u_epsp_amp,u_epsp_onset,u_ipsp_t,u_ipsp_amp,u_ipsp_onset,u_response_std,u_peak_std,u_epsp_hw,u_epsp_dvdt,u_ipsp_dvdt,c_epsp_t,c_epsp_amp,c_epsp_onset,c_ipsp_t,c_ipsp_amp,c_ipsp_onset,c_response_std,c_peak_std,c_epsp_hw,c_epsp_dvdt,c_ipsp_dvdt
+0,20171011_001,-68.19339,0.004281250000005343,9.220489977728285,6.347309,5.963251670378619,,,,0.18459648,0.19262087,11.200000000000001,3.832244873046875,,7.867483296213808,6.2146835,3.457683741648107,24.80512249443207,-6.2942505,8.268374164810691,0.3236844,0.5472376,6.3,2.158050537109375,-1.0028076171875,6.714922048997773,7.925976,3.457683741648107,23.802895322939868,-8.3025055,6.915367483296214,0.39545476,0.5954958,4.9,3.760528564453125,-1.3578033447265625

data_processed/df_GRC_properties/20171027_000.csv

@@ -0,0 +1,2 @@
+,exptname,Vm_baseline,c_latency,cmd_epsp_t,cmd_epsp_amp,cmd_epsp_onset,cmd_ipsp_t,cmd_ipsp_amp,cmd_ipsp_onset,cmd_response_std,cmd_peak_std,cmd_epsp_hw,cmd_epsp_dvdt,cmd_ipsp_dvdt,u_epsp_t,u_epsp_amp,u_epsp_onset,u_ipsp_t,u_ipsp_amp,u_ipsp_onset,u_response_std,u_peak_std,u_epsp_hw,u_epsp_dvdt,u_ipsp_dvdt,c_epsp_t,c_epsp_amp,c_epsp_onset,c_ipsp_t,c_ipsp_amp,c_ipsp_onset,c_response_std,c_peak_std,c_epsp_hw,c_epsp_dvdt,c_ipsp_dvdt
+0,20171027_000,-60.00532,0.004306249999991962,14.582405345211582,4.726692,7.9677060133630295,18.140311804008906,-1.356205,14.933184855233852,3.233196,3.2449381,32.9,1.1498260498046875,0.0,9.521158129175946,4.180908,4.810690423162583,4.459910913140312,-0.5371094,2.7060133630289536,2.0200346,1.3982114,15.450000000000001,1.03759765625,0.0,15.684855233853007,15.912155,4.760579064587973,40.790645879732736,-7.9018364,16.08574610244989,4.766958,6.250582,30.900000000000002,2.805023193359375,0.1770782470703125

data_processed/df_GRC_properties/20171031_004_hyperpolarized.csv

@@ -0,0 +1,2 @@
+,exptname,Vm_baseline,c_latency,cmd_epsp_t,cmd_epsp_amp,cmd_epsp_onset,cmd_ipsp_t,cmd_ipsp_amp,cmd_ipsp_onset,cmd_response_std,cmd_peak_std,cmd_epsp_hw,cmd_epsp_dvdt,cmd_ipsp_dvdt,u_epsp_t,u_epsp_amp,u_epsp_onset,u_ipsp_t,u_ipsp_amp,u_ipsp_onset,u_response_std,u_peak_std,u_epsp_hw,u_epsp_dvdt,u_ipsp_dvdt,c_epsp_t,c_epsp_amp,c_epsp_onset,c_ipsp_t,c_ipsp_amp,c_ipsp_onset,c_response_std,c_peak_std,c_epsp_hw,c_epsp_dvdt,c_ipsp_dvdt
+0,20171031_004_hyperpolarized,-71.76771,0.004314999999991187,,,,10.874164810690424,-1.8690796,5.863028953229398,1.0287526,1.0255831,,,0.0,20.29510022271715,4.1307755,5.562360801781737,,,,0.99284154,1.0401732,36.7,0.973663330078125,,20.44543429844098,6.758522,5.612472160356347,,,,1.3876797,1.6189443,34.8,1.180877685546875,

data_processed/df_GRC_properties/20171107_002.csv

@@ -0,0 +1,2 @@
+,exptname,Vm_baseline,c_latency,cmd_epsp_t,cmd_epsp_amp,cmd_epsp_onset,cmd_ipsp_t,cmd_ipsp_amp,cmd_ipsp_onset,cmd_response_std,cmd_peak_std,cmd_epsp_hw,cmd_epsp_dvdt,cmd_ipsp_dvdt,u_epsp_t,u_epsp_amp,u_epsp_onset,u_ipsp_t,u_ipsp_amp,u_ipsp_onset,u_response_std,u_peak_std,u_epsp_hw,u_epsp_dvdt,u_ipsp_dvdt,c_epsp_t,c_epsp_amp,c_epsp_onset,c_ipsp_t,c_ipsp_amp,c_ipsp_onset,c_response_std,c_peak_std,c_epsp_hw,c_epsp_dvdt,c_ipsp_dvdt
+0,20171107_002,-64.178375,0.004207500000006803,9.370824053452116,5.3128815,5.762806236080179,,,,0.21649614,0.215509,9.499999999999998,2.71270751953125,,6.213808463251671,17.556995,3.307349665924276,21.096881959910913,-17.263557,6.414253897550111,0.6838763,1.5481513,2.75,8.380584716796875,-10.845489501953125,5.712694877505568,17.445621,3.307349665924276,11.325167037861915,-19.294159,5.913140311804009,0.59337,1.2564269,2.4499999999999997,7.957305908203125,-11.432342529296875