Meeting outputs
main decisions
- force19, ok
- continue discussion with other SFB, info dissemination project is our to lead
- Get a meeting with Thomas. We do not care who develop it but we need something going to start testing.
- Continue to work on mice metadata (some files will be sent by matthew soonish)
strategy
Main objective is information dissemination, the development of the tool should keep this in mind.
- Get MVP with commenting
- Analyse comment to find gaps
- modify tool to push people to fill the gaps (empty box, badges,...)
software
- need simplified workflow, only one tab ?
visualisation
- need search filter function
- interaction with author should be straightforward
- maybe need to link to something they already know, as a reminder of what we are talking about.
My role
- ASAP stop developing, but foster tool use
- social component
#Vorbereitung
1. Collaborations
2. Shiny Software
- dropbox version
- server version with ITB server
Visualisation and data upload in a 2 tab browsable software
3. Visualisation
- highlighted versus normal entries work
- google-like visualisation has limitations
- NEED visualisation of protocols ?
- long term: browsability of results
** Outside of my area of expertise **
4. Standards
- Smartfigure: zip +xml
- metadata: minimal standards:
- animal (species, genotype, date_of_birth, light modus, diet) - similar to/extended from pyrat ?
- experiment (date, time, temperature, light modus)
- https://www.nwb.org/ standard for data (python, matlab export, called hdf5)
5. RDM work
- talk with Robert, work with keisuke:
- data of paper to be organised, pushed to GIN
- structure worked, file naming comes next.
- time to perform the work will be reported : paper to follow when 3-4 case studies are there.
- next steps will be to share the analysis code.
- next will talk with christian for imaging data, using same approach.
6. survey and server
- 14 labs responded
- estimation gots from 5 to 200 TB (whole lab data)
- need to talk to itb people about it.