SFB1315INFproject_open/06_disseminations/01_report_conf/presentations/2022-kickoff-infpres.qmd

---
title: "The SFB1315 infrastructure"
subtitle: "Closer collaboration, quality assurance and more ouptuts"
author: "Julien Colomb and Petra Ritter"
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    footer: "INF project SFB1315 - kickoff presentation"
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![](images/toobusy.png)

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![](images/obiwan.jpeg)
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::: notes
tools are made from other, quality of the tool is not that relevant: needs other skills -\> training -\> phd student first here to help

This is not an admin task, it is not about checking boxes.
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------------------------------------------------------------------------

![Openscapes Theory of Change: As teams tackle research questions (blue), their approaches (grey) can be accelerated through open data science practices (green), which are underpinned by existing open source tools (orange). Art by Allison Horst.](images/openscapes_practice_mindset.jpg){alt="Openscapes Theory of Change: As teams tackle research questions (blue), their approaches (grey) can be accelerated through open data science practices (green), which are underpinned by existing open source tools (orange). Art by Allison Horst." width="626"}

::: notes
The philosophy behind the work: foster robust analysis, collaboration and communication.
kindness -\> Z project, later today + make onboarding easier
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# The INF project

![](images/INF_graphicalabstract_210816.jpg){fig-align="center" width="100%"}

::: notes
what: - FAIR data production - Reproducible analysis (workflow) - Use of metadata standards
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## FAIR Data

![](images/04_open_research_data_material.png)

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Hardware publication: BUA project
![](images/logo.svg){fig-align="center"}
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## INF PI {.smaller}

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![](images/Petra-Ritter.jpg){width="400px"}
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**Petra Ritter**

BIH Johanna Quandt Professor for Brain Simulation

Director, [Brain Simulation Section](https://www.brainsimulation.org/bsw/zwei/home)

[TVB-Cloud](https://cordis.europa.eu/project/id/826421) Project Coordinator

[Health Data Cloud](https://www.healthdatacloud.eu/) Project Coordinator

[Virtual Research Environment](https://www.bihealth.org/en/translation/network/digital-medicine/bihcharite-virtual-research-environment) Project Coordinator

[NFDI-Neuro](https://nfdi-neuro.de/) Spokesperson

[eBRAIN-Health](https://cordis.europa.eu/project/id/101058516 "https://www.charite.de/en/service/press_reports/artikel/detail/horizon_europe_charite_coordinates_four_new_eu_projects/") Project Coordinator
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![](images/Screenshot%202022-11-17%20at%2011.49.12.png)
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# WHY producing FAIR data?

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1.  Ethical aspects
2.  Efficiency aspects
3.  Evolution of Research Evaluation
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```{=html}
<iframe src="https://widgets.figshare.com/articles/7053797/embed?show_title=1" width="568" height="351" allowfullscreen frameborder="0"></iframe>
```
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## New DFG CV template: up to 10 non-journal publications

This might include non-peer-reviewed articles on preprint servers and contributions to conferences or anthology volumes, data sets, protocols of clinical trials, software packages, patents applied for and granted, blog contributions, infrastructures or transfer.
You may also indicate other forms of academic output here, such as contributions to the (technical) infrastructure of an academic community (including in an international context) and contributions to science communication.
**This second category is also restricted to a maximum of ten items.**

::: notes
The DFG's goal is to shift the focus of the review and evaluation of a proposal away from quantitative indicators and instead place the content-related aspects in the foreground.
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## DORA endorsed by the EU

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![](https://sfdora.org/wp-content/uploads/2020/11/Dora2.png){width="365"}
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> The scientific content of a paper is much more important than publication metrics.

> Consider the value and impact of all research outputs (including datasets and software).
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## Research evaluation is slowly evolving.

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-   SFBs are in first line
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-   There are reasons funding agencies are doing that
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![](images/Screenshot%202022-11-15%20at%2013.23.37.png)
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![](images/Screenshot%202022-11-15%20at%2013.25.58.png)
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## Personal advantage

![](images/futureself.png)

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**It is more fun**
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Learning new tools
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Open source communities (brainhack)
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More collaboration and collaborators
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## Facilitate collaboration {auto-animate="true"}

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> The obvious advantage for everyone is they got something that none of us could have developed alone.
>
> *Interview: White rabbit, by the Open make team, Javier Serrano and Amanda Diez Frenandez.\
> *
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## Facilitate collaboration {auto-animate="true" visibility="hidden"}

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## Facilitate collaboration {auto-animate="true"}

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![](images/distributed-collaboration.jpg)
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-   different skillset
-   different time zone
-   different objectives
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## Data science + Standardization

![](images/healthy-research-tree.jpg){width="80%"}

# The How: 2022-23

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1.  People of contact: one on one meeting
2.  Workshop in January
3.  Help-desk
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-   Start early
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-   Create information hub
-   link with project management
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-   Basics: version control, data backup, sharing, archive and publication. Legal aspects
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-   advanced: data format, workflows and automation
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## One on One meeting

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-   person of contact
-   minimum: 30 min/3weeks
-   goals:
    -   Spot issues

    -   Provide professional support

    -   Link members with similar issues

    -   Define use case for RDM communities work
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## Workshop

-   16-17 January 2023, hybrid or online.

-   Target: contact people + volunteers

-   Content: RDM basics, tools on-boarding.

-   Output: one data management plan per project.

## TOOLS: GIN

##  {background-video="images/GINtonicpitch.mp4" background-size="cover" background-muted="false"}

## GIN for the SFB1315

https://gindata.hu-berlin.de

-   non-sensitive collected data
-   project management data, material and methods, code, manuscripts,...
-   Main readme can be used as `main URL` linking to other elements and files.

## TOOLS: VRE

##  {background-video="images/VRE.mp4" background-size="cover" background-muted="false"}

## VRE summary

Not in the video:
- metadata tooling (openminds, or other json schemas)
- provenance tracking: data lineage collected

- **sensitive data** (GDPR compliant)
- large computing power attached
- several sub-tools coming with: wiki, jupyterhub, guacamole, superset


## Technical restriction

-   VRE on charite network, relatively large administration burden to get an account (needs to be verified by the charite IT)
-   GIN on the HU: no way to access from the Charité network.

Charité IT and HU CMS in discussion (since June 2022).
Workaround can be used, if not too much data.

# Communication

-   **make a Hub**: One main URL for project entry 
-   Main URL accessible without login
-   Different users need different information
-   Researcher keeps full control.
-   The SFB is also a project: needs for a unique URL listing all project

## Smartfigure Gallery as project hub

-   One figure
-   links
-   Description
-   keywords

See <https://sdash.sourcedata.io/?q=sfb1315-project>

## Smartfigure as internal communication

-   Keyword for your project
-   Share a figure, add description
-   Share with your group, SFB group, the world

-\> Get early feedback, thrive collaboration.

## Smartfigure and tools

![](images/2021-SFgall-presentionC01/2021-SFgall-presentionC01.001.jpeg){width="640"}

## Smartfigure as external communication and outreach

Public figures may be chosen as SFB highlights.

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Can be used for the SFB, or for your lab.
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#  {background-video="images/dataanalysis-bk.mp4"}

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Early decisions are important.
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## What you can do as a PI ?

-   Be supportive
-   Give feedback
-   Ask questions, ask for help

Sharing is caring.

# Thank you for your attention