added new data analysis, debug gitsubmodule

.gitmodules

@@ -1,3 +1,3 @@
 [submodule "2021_SFB1315-INF-grantapplication"]
-	path = private_elements
+	path = 2021_SFB1315-INF-grantapplication
 	url = https://gin.g-node.org/jcolomb/2021_SFB1315-INF-grantapplication

04_data_analysis/survey_data_analysis/SFBdata_tableprep.R

@@ -4,7 +4,7 @@ library (dplyr)
 ## read spreadsheet
 sfb_datainfo <- readxl::read_excel("~/Documents/Seafile/My Library/sfb-datainfo.xlsx",
 skip = 1)
-
+sfb_datainfo$data_size_TB <- as.numeric(sfb_datainfo$data_size_TB)
 ## for each subproject: data storage needed
 #names(sfb_datainfo)
 datastorage <-sfb_datainfo %>%
@@ -39,5 +39,5 @@ for (i in c(1:length(unique(datatype$data_type)))){
 }
 resulttable = resulttable %>% arrange (-frequency_projects) %>% select (-`Project number`)
 View(resulttable)
-write.csv(resulttable, file ="02_figures/SFB_data/datatype.csv")
-write.csv(datastorage2,file ="02_figures/SFB_data/datasize.csv")
+write.csv(resulttable, file ="04_data_analysis/survey_data_analysis/datatype.csv")
+write.csv(datastorage2,file ="04_data_analysis/survey_data_analysis/datasize.csv")

04_data_analysis/survey_data_analysis/datasize.csv

@@ -2,7 +2,7 @@
 "1","A01","2.1"
 "2","A02","3.55"
 "3","A03",NA
-"4","A04",NA
+"4","A04","204.5"
 "5","A05","142.0007"
 "6","A06","1.1"
 "7","A07","14.0011"
@@ -11,10 +11,10 @@
 "10","B03",NA
 "11","B04",NA
 "12","B05","10.601"
-"13","B06","0.5"
+"13","B06","13.2"
 "14","C01","2.1"
 "15","INF","5.52"
 "16","N01","300.03"
 "17","N02","23.6"
 "18","N03","2.013"
-"19","Sum","560.9128"
+"19","Sum","778.1128"

04_data_analysis/survey_data_analysis/datatype.csv

@@ -1,24 +1,2 @@
-"","data_type","Sensitive (human) data ?","Raw data format","Project number","frequency_projects"
-"1","behavioral data","no","hdf5, .txt, .xlsx, csv, .txt",NA,8
-"2","electrophysiology","no","dat",NA,7
-"3","Live Imaging data","no","TIFF, TIFF",NA,6
-"4","behaviour data (videos)","no","wav, .mp4, text",NA,5
-"5","Imaging data - histology","no",".czi",NA,4
-"6","MRI","yes","dcm, dcm, dcm",NA,4
-"7","molecular bio","no",".tiff",NA,3
-"8","survey","yes","csv, .txt",NA,3
-"9","biochemical data","no","",NA,2
-"10","EEG","yes","eeg, vhdr, vmrk",NA,2
-"11","immunostaining","no",".tiff",NA,2
-"12","proteomics","no","",NA,2
-"13","RNAseq","no","",NA,2
-"14","Actigraphy Data","yes","gt3x, agd",NA,1
-"15","annotated smartfigure","no","jpg, text, database",NA,1
-"16","DNA sequences","no","",NA,1
-"17","iEEG","yes","eeg, vhdr, vmrk",NA,1
-"18","Intrinsic Imaging data","no",".pxp, .png/.bmp",NA,1
-"19","Metabolomics","no","",NA,1
-"20","MRI structural","yes","",NA,1
-"21","neuropixel","no","",NA,1
-"22","neuropsychological data","yes","text, xls",NA,1
-"23","open education resources","no","markdown, mp4, h5p, moodle",NA,1
+"","data_type","Sensitive (human) data ?","Raw data format","frequency_projects"
+"1","Actigraphy Data","yes",NA,NA