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@@ -40,18 +40,35 @@
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},
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{
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"cell_type": "code",
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- "execution_count": null,
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+ "execution_count": 1,
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"metadata": {},
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- "outputs": [],
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+ "outputs": [
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+ {
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+ "name": "stdout",
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+ "output_type": "stream",
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+ "text": [
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+ "sub2\n"
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+ ]
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+ }
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+ ],
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"source": [
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"repository_title = input()"
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]
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},
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{
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"cell_type": "code",
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- "execution_count": null,
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+ "execution_count": 2,
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"metadata": {},
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- "outputs": [],
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+ "outputs": [
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+ {
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+ "name": "stdout",
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+ "output_type": "stream",
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+ "text": [
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+ "/home/jovyan\n",
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+ "https://gin.g-node.org/rino/sub1.git\n"
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+ ]
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+ }
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+ ],
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"source": [
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"%cd ~/\n",
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"tmp = !git remote -v\n",
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@@ -64,6 +81,25 @@
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"print(ssh_url)"
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]
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},
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+ {
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+ "cell_type": "code",
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+ "execution_count": 2,
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+ "metadata": {},
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+ "outputs": [
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+ {
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+ "name": "stdout",
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+ "output_type": "stream",
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+ "text": [
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+ "https://gin.g-node.org/rino/sub2.git\n"
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+ ]
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+ }
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+ ],
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+ "source": [
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+ "################################\n",
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+ "ssh_url = \"https://gin.g-node.org/rino/sub2.git\"\n",
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+ "print(ssh_url)"
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+ ]
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+ },
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{
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"cell_type": "markdown",
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"metadata": {},
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@@ -73,9 +109,37 @@
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},
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{
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"cell_type": "code",
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- "execution_count": null,
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+ "execution_count": 4,
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"metadata": {},
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- "outputs": [],
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+ "outputs": [
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+ {
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+ "name": "stdout",
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+ "output_type": "stream",
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+ "text": [
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+ "\u001b[33mhint: Using 'master' as the name for the initial branch. This default branch name\u001b[m\n",
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+ "\u001b[33mhint: is subject to change. To configure the initial branch name to use in all\u001b[m\n",
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+ "\u001b[33mhint: of your new repositories, which will suppress this warning, call:\u001b[m\n",
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+ "\u001b[33mhint: \u001b[m\n",
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+ "\u001b[33mhint: \tgit config --global init.defaultBranch <name>\u001b[m\n",
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+ "\u001b[33mhint: \u001b[m\n",
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+ "\u001b[33mhint: Names commonly chosen instead of 'master' are 'main', 'trunk' and\u001b[m\n",
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+ "\u001b[33mhint: 'development'. The just-created branch can be renamed via this command:\u001b[m\n",
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+ "\u001b[33mhint: \u001b[m\n",
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+ "\u001b[33mhint: \tgit branch -m <name>\u001b[m\n",
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+ "Initialized empty Git repository in /home/jovyan/.tmp/sub1/.git/\n",
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+ "cp: cannot stat '/home/jovyan/WORKFLOW/PACKAGE/.': No such file or directory\n",
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+ "/home/jovyan/.tmp/sub1\n",
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+ "On branch master\n",
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+ "\n",
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+ "Initial commit\n",
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+ "\n",
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+ "nothing to commit (create/copy files and use \"git add\" to track)\n",
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+ "error: src refspec master does not match any\n",
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+ "\u001b[31merror: failed to push some refs to 'https://gin.g-node.org/rino/sub1.git'\n",
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+ "\u001b[m"
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+ ]
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+ }
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+ ],
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"source": [
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"!mkdir ~/.tmp/\n",
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"!git init ~/.tmp/$repository_title\n",
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@@ -91,6 +155,119 @@
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"# !datalad push"
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]
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},
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+ {
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+ "cell_type": "code",
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+ "execution_count": 5,
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+ "metadata": {},
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+ "outputs": [
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+ {
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+ "name": "stdout",
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+ "output_type": "stream",
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+ "text": [
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+ "Reinitialized existing Git repository in /home/jovyan/.tmp/sub1/.git/\n",
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+ "/home/jovyan/.tmp/sub1\n",
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+ "[master (root-commit) 8ebcdb3] 1st commit\n",
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+ " 12 files changed, 587 insertions(+)\n",
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+ " create mode 100644 .gitconfig\n",
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+ " create mode 100644 .gitignore\n",
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+ " create mode 100644 SECTIONS/enter_metadata.ipynb\n",
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+ " create mode 100644 SECTIONS/finish.ipynb\n",
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+ " create mode 100644 SECTIONS/save.ipynb\n",
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+ " create mode 100644 SECTIONS/util/datalad_save_push.ipynb\n",
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+ " create mode 100644 SECTIONS/util/prepare_for_workflow_every_time.ipynb\n",
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+ " create mode 100644 experiment.ipynb\n",
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+ " create mode 100644 input_data/.gitkeep\n",
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+ " create mode 100644 meta_data.json\n",
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+ " create mode 100644 output_data/.gitkeep\n",
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+ " create mode 100644 source/main.ipynb\n",
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+ "error: remote sub1 already exists.\n",
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+ "Enumerating objects: 18, done.\n",
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+ "Counting objects: 100% (18/18), done.\n",
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+ "Delta compression using up to 72 threads\n",
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+ "Compressing objects: 100% (13/13), done.\n",
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+ "Writing objects: 100% (18/18), 4.33 KiB | 2.17 MiB/s, done.\n",
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+ "Total 18 (delta 5), reused 0 (delta 0), pack-reused 0\n",
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+ "To https://gin.g-node.org/rino/sub1.git\n",
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+ " * [new branch] master -> master\n"
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+ ]
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+ }
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+ ],
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+ "source": [
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+ "\n",
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+ "!git init ~/.tmp/sub1\n",
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+ "\n",
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+ "!cp -r ~/PACKAGE/. ~/.tmp/sub1/\n",
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+ "\n",
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+ "%cd ~/.tmp/sub1\n",
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+ "!git add ~/.tmp/sub1\n",
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+ "!git commit -m '1st commit'\n",
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+ "!git remote add sub1 $ssh_url\n",
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+ "!git push sub1 master\n",
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+ "# !datalad save --to-git -m \"1st commit\"\n",
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+ "# !datalad push"
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+ ]
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+ },
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+ {
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+ "cell_type": "code",
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+ "execution_count": 3,
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+ "metadata": {},
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+ "outputs": [
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+ {
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+ "name": "stdout",
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+ "output_type": "stream",
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+ "text": [
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+ "\u001b[33mhint: Using 'master' as the name for the initial branch. This default branch name\u001b[m\n",
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+ "\u001b[33mhint: is subject to change. To configure the initial branch name to use in all\u001b[m\n",
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+ "\u001b[33mhint: of your new repositories, which will suppress this warning, call:\u001b[m\n",
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+ "\u001b[33mhint: \u001b[m\n",
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+ "\u001b[33mhint: \tgit config --global init.defaultBranch <name>\u001b[m\n",
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+ "\u001b[33mhint: \u001b[m\n",
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+ "\u001b[33mhint: Names commonly chosen instead of 'master' are 'main', 'trunk' and\u001b[m\n",
|
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+ "\u001b[33mhint: 'development'. The just-created branch can be renamed via this command:\u001b[m\n",
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+ "\u001b[33mhint: \u001b[m\n",
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+ "\u001b[33mhint: \tgit branch -m <name>\u001b[m\n",
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+ "Initialized empty Git repository in /home/jovyan/.tmp/sub2/.git/\n",
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+ "/home/jovyan/.tmp/sub2\n",
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+ "[master (root-commit) 2186659] 1st commit\n",
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+ " 12 files changed, 587 insertions(+)\n",
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+ " create mode 100644 .gitconfig\n",
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+ " create mode 100644 .gitignore\n",
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+ " create mode 100644 SECTIONS/enter_metadata.ipynb\n",
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+ " create mode 100644 SECTIONS/finish.ipynb\n",
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+ " create mode 100644 SECTIONS/save.ipynb\n",
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+ " create mode 100644 SECTIONS/util/datalad_save_push.ipynb\n",
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+ " create mode 100644 SECTIONS/util/prepare_for_workflow_every_time.ipynb\n",
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+ " create mode 100644 experiment.ipynb\n",
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+ " create mode 100644 input_data/.gitkeep\n",
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+ " create mode 100644 meta_data.json\n",
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+ " create mode 100644 output_data/.gitkeep\n",
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+ " create mode 100644 source/main.ipynb\n",
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+ "Enumerating objects: 18, done.\n",
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+ "Counting objects: 100% (18/18), done.\n",
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+ "Delta compression using up to 72 threads\n",
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+ "Compressing objects: 100% (13/13), done.\n",
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+ "Writing objects: 100% (18/18), 4.33 KiB | 2.17 MiB/s, done.\n",
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+ "Total 18 (delta 5), reused 0 (delta 0), pack-reused 0\n",
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+ "To https://gin.g-node.org/rino/sub2.git\n",
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+ " * [new branch] master -> master\n"
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+ ]
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+ }
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+ ],
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+ "source": [
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+ "\n",
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+ "!git init ~/.tmp/$repository_title\n",
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+ "# !datalad create ~/.tmp/$repository_title\n",
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+ "!cp -r ~/PACKAGE/. ~/.tmp/$repository_title/\n",
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+ "\n",
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+ "%cd ~/.tmp/$repository_title\n",
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+ "!git add ~/.tmp/$repository_title\n",
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+ "!git commit -m '1st commit'\n",
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+ "!git remote add $repository_title $ssh_url\n",
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+ "!git push $repository_title master\n",
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+ "# !datalad save --to-git -m \"1st commit\"\n",
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+ "# !datalad push"
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+ ]
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+ },
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{
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"cell_type": "markdown",
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"metadata": {},
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@@ -100,9 +277,23 @@
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},
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{
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"cell_type": "code",
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- "execution_count": null,
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+ "execution_count": 4,
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"metadata": {},
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- "outputs": [],
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+ "outputs": [
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+ {
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+ "name": "stdout",
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+ "output_type": "stream",
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+ "text": [
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+ "/home/jovyan\n",
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+ "Cloning into '/home/jovyan/experiments/sub2'...\n",
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+ "remote: Enumerating objects: 18, done.\u001b[K \u001b[K\n",
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+ "remote: Counting objects: 100% (18/18), done.\u001b[K \u001b[K\n",
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+ "remote: Compressing objects: 100% (13/13), done.\u001b[K \u001b[K\n",
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+ "remote: Total 18 (delta 5), reused 0 (delta 0)\u001b[K\n",
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+ "Unpacking objects: 100% (18/18), 4.31 KiB | 55.00 KiB/s, done.\n"
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+ ]
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+ }
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+ ],
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"source": [
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"%cd ~/\n",
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"!git submodule add $ssh_url ./experiments/$repository_title"
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@@ -117,7 +308,7 @@
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},
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{
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"cell_type": "code",
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- "execution_count": null,
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+ "execution_count": 5,
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"metadata": {},
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"outputs": [],
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"source": [
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@@ -192,7 +383,7 @@
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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- "version": "3.8.12"
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+ "version": "3.7.8"
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}
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},
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"nbformat": 4,
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