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opto dataset hp lfp, stim cfg and stim periods

Irina Pochinok hai 10 meses
pai
achega
5dfe128ea6
Modificáronse 35 ficheiros con 6197 adicións e 0 borrados
  1. 1 0
      optogenetic/hp/lfp/1653_1_part1_signal_1_500.mat
  2. 1 0
      optogenetic/hp/lfp/1653_1_part2_signal_1_500.mat
  3. 1 0
      optogenetic/hp/lfp/1653_2_signal_1_500.mat
  4. 1 0
      optogenetic/hp/lfp/1789_1_part1_signal_1_500.mat
  5. 1 0
      optogenetic/hp/lfp/1789_1_part2_signal_1_500.mat
  6. 1 0
      optogenetic/hp/lfp/2055_2_2_signal_1_500.mat
  7. 1 0
      optogenetic/hp/lfp/2057_1_signal_1_500.mat
  8. 1 0
      optogenetic/hp/lfp/2057_2_signal_1_500.mat
  9. 1 0
      optogenetic/hp/lfp/2057_3_signal_1_500.mat
  10. 1 0
      optogenetic/hp/lfp/2057_4_signal_1_500.mat
  11. 1 0
      optogenetic/hp/lfp/2063_1_signal_1_500.mat
  12. 1 0
      optogenetic/hp/lfp/2063_2_part1_signal_1_500.mat
  13. 1 0
      optogenetic/hp/lfp/2063_2_part2_signal_1_500.mat
  14. 1 0
      optogenetic/hp/lfp/2063_2_part3_signal_1_500.mat
  15. 1 0
      optogenetic/hp/lfp/22915_1_signal_1_500.mat
  16. 1 0
      optogenetic/hp/lfp/22915_2_signal_1_500.mat
  17. 1 0
      optogenetic/hp/lfp/22915_3_d_signal_1_500.mat
  18. 1 0
      optogenetic/hp/lfp/22915_4_signal_1_500.mat
  19. 1 0
      optogenetic/hp/lfp/22915_5_signal_1_500.mat
  20. 1 0
      optogenetic/hp/lfp/24220_1_signal_1_500.mat
  21. 1 0
      optogenetic/hp/lfp/24220_2_signal_1_500.mat
  22. 1 0
      optogenetic/hp/lfp/24220_3_signal_1_500.mat
  23. 1 0
      optogenetic/hp/lfp/24220_4_signal_1_500.mat
  24. 1 0
      optogenetic/hp/lfp/24220_5_signal_1_500.mat
  25. 1 0
      optogenetic/hp/lfp/4010_1_part1_signal_1_500.mat
  26. 1 0
      optogenetic/hp/lfp/4010_1_part2_signal_1_500.mat
  27. 1 0
      optogenetic/hp/lfp/4010_2_signal_1_500.mat
  28. 1 0
      optogenetic/hp/lfp/4010_4_signal_1_500.mat
  29. 1 0
      optogenetic/hp/lfp/4010_5_signal_1_500.mat
  30. 1 0
      optogenetic/hp/lfp/4010_6_dhp_signal_1_500.mat
  31. 1 0
      optogenetic/hp/lfp/4010_7_signal_1_500.mat
  32. 1 0
      optogenetic/hp/lfp/4010_8_signal_1_500.mat
  33. 30 0
      optogenetic/opto_stim_protocol.txt
  34. 797 0
      optogenetic/stim_periods_control_group.txt
  35. 5338 0
      optogenetic/stim_periods_opsin_group.txt

+ 1 - 0
optogenetic/hp/lfp/1653_1_part1_signal_1_500.mat

@@ -0,0 +1 @@
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+ 1 - 0
optogenetic/hp/lfp/1653_1_part2_signal_1_500.mat

@@ -0,0 +1 @@
+/annex/objects/MD5-s12176511--c4eeefb51ba8b7a98086e0abfa7d1dc0

+ 1 - 0
optogenetic/hp/lfp/1653_2_signal_1_500.mat

@@ -0,0 +1 @@
+/annex/objects/MD5-s59288458--f4c1af3d8c5bae97c7a1ffab7d1ed9bf

+ 1 - 0
optogenetic/hp/lfp/1789_1_part1_signal_1_500.mat

@@ -0,0 +1 @@
+/annex/objects/MD5-s101331984--72b95c66f9284f2e9fed2e49b9f4a86f

+ 1 - 0
optogenetic/hp/lfp/1789_1_part2_signal_1_500.mat

@@ -0,0 +1 @@
+/annex/objects/MD5-s55098189--7895556441daf99ce58b2f04b60bb224

+ 1 - 0
optogenetic/hp/lfp/2055_2_2_signal_1_500.mat

@@ -0,0 +1 @@
+/annex/objects/MD5-s61598247--6e3e3cfac5733bb3c11a8ef7db754099

+ 1 - 0
optogenetic/hp/lfp/2057_1_signal_1_500.mat

@@ -0,0 +1 @@
+/annex/objects/MD5-s85543587--b4a9f439e58482d1ec5f9c20b29642bb

+ 1 - 0
optogenetic/hp/lfp/2057_2_signal_1_500.mat

@@ -0,0 +1 @@
+/annex/objects/MD5-s125791630--b83c83d4547ac475e957a8fa511fca48

+ 1 - 0
optogenetic/hp/lfp/2057_3_signal_1_500.mat

@@ -0,0 +1 @@
+/annex/objects/MD5-s82826673--9305272d60e86df9deaba1bf4c4cf832

+ 1 - 0
optogenetic/hp/lfp/2057_4_signal_1_500.mat

@@ -0,0 +1 @@
+/annex/objects/MD5-s109728607--f79e61a7b1c45d6045b0e3c0da4e7d06

+ 1 - 0
optogenetic/hp/lfp/2063_1_signal_1_500.mat

@@ -0,0 +1 @@
+/annex/objects/MD5-s85128098--1b7012a796ba6c0a0b57c1c5618f71f4

+ 1 - 0
optogenetic/hp/lfp/2063_2_part1_signal_1_500.mat

@@ -0,0 +1 @@
+/annex/objects/MD5-s11911883--5af79c174643a70be0107113dfa29deb

+ 1 - 0
optogenetic/hp/lfp/2063_2_part2_signal_1_500.mat

@@ -0,0 +1 @@
+/annex/objects/MD5-s10907646--317870597c8279048a3d527cc3036f7e

+ 1 - 0
optogenetic/hp/lfp/2063_2_part3_signal_1_500.mat

@@ -0,0 +1 @@
+/annex/objects/MD5-s10912750--3cc8337d8a2a92be55802ace95e0ab8e

+ 1 - 0
optogenetic/hp/lfp/22915_1_signal_1_500.mat

@@ -0,0 +1 @@
+/annex/objects/MD5-s135066821--4b46484783e3f664021db8f6ee6e7ded

+ 1 - 0
optogenetic/hp/lfp/22915_2_signal_1_500.mat

@@ -0,0 +1 @@
+/annex/objects/MD5-s86120149--6e00cf859db3952c7477e8d2a2040df8

+ 1 - 0
optogenetic/hp/lfp/22915_3_d_signal_1_500.mat

@@ -0,0 +1 @@
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+ 1 - 0
optogenetic/hp/lfp/22915_4_signal_1_500.mat

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+ 1 - 0
optogenetic/hp/lfp/22915_5_signal_1_500.mat

@@ -0,0 +1 @@
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+ 1 - 0
optogenetic/hp/lfp/24220_1_signal_1_500.mat

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+/annex/objects/MD5-s67900046--8060284cb6c19b963db386f20f15dedc

+ 1 - 0
optogenetic/hp/lfp/24220_2_signal_1_500.mat

@@ -0,0 +1 @@
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+ 1 - 0
optogenetic/hp/lfp/24220_3_signal_1_500.mat

@@ -0,0 +1 @@
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+ 1 - 0
optogenetic/hp/lfp/24220_4_signal_1_500.mat

@@ -0,0 +1 @@
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+ 1 - 0
optogenetic/hp/lfp/24220_5_signal_1_500.mat

@@ -0,0 +1 @@
+/annex/objects/MD5-s69546055--b7e86bd46bfd34621a8020344e817f38

+ 1 - 0
optogenetic/hp/lfp/4010_1_part1_signal_1_500.mat

@@ -0,0 +1 @@
+/annex/objects/MD5-s82042827--ecbc9fc7f45750abb571833acb87292d

+ 1 - 0
optogenetic/hp/lfp/4010_1_part2_signal_1_500.mat

@@ -0,0 +1 @@
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+ 1 - 0
optogenetic/hp/lfp/4010_2_signal_1_500.mat

@@ -0,0 +1 @@
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optogenetic/hp/lfp/4010_4_signal_1_500.mat

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+ 1 - 0
optogenetic/hp/lfp/4010_5_signal_1_500.mat

@@ -0,0 +1 @@
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+ 1 - 0
optogenetic/hp/lfp/4010_6_dhp_signal_1_500.mat

@@ -0,0 +1 @@
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+ 1 - 0
optogenetic/hp/lfp/4010_7_signal_1_500.mat

@@ -0,0 +1 @@
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+ 1 - 0
optogenetic/hp/lfp/4010_8_signal_1_500.mat

@@ -0,0 +1 @@
+/annex/objects/MD5-s96799330--d7616bbdb0a7758254aed32ae34e64da

+ 30 - 0
optogenetic/opto_stim_protocol.txt

@@ -0,0 +1,30 @@
+# in protocol first number is laser light power and second is number of stimulations
+
+24220_1: {'pulse_blue': {'protocol': {'10': 30, '20': 30, '30': 30, '40': 30,'50': 30}}}
+24220_2: {'pulse_blue': {'protocol': {'10': 30, '20': 30, '30': 30, '40': 30,'50': 30}}}
+24220_3: {'pulse_blue': {'protocol': {'10': 30, '20': 30, '30': 30, '40': 30,'50': 30}}}
+24220_4: {'pulse_blue': {'protocol': {'10': 30, '20': 30, '30': 30, '40': 30,'50': 30}}}
+24220_5: {'pulse_blue': {'protocol': {'10': 30, '20': 30, '30': 30, '40': 30,'50': 30}}}
+
+1653_1:{'pulse_blue_1': {'protocol': {'5': 30, '7': 30, '10': 30, '15': 30, '20': 30, '25': 30, '30': 30, '35': 10, '40': 10, '45': 10, '50': 10, '70': 10, '90': 10}} , 'pulse_blue_2': {'protocol': {'70': 30}}}	 
+1653_2: {'pulse_blue': {'protocol': {'5': 30, '7': 30, '10': 30, '15': 30, '20': 30, '25': 10}}}										
+4010_1: {'pulse_blue_1': {'protocol': {'5': 30, '10': 30, '15': 30, '20': 30, '25': 30, '30': 30}} , 'pulse_blue_2': {'protocol': {'40': 30, '50': 30, '60': 30, '70': 30}}}									
+4010_2: {'pulse_blue': {'protocol': {'3': 30, '5': 30, '7': 30, '10': 30, '15': 30, '20': 30, '25': 30, '30': 30, '35': 30, '40': 30, '45': 30}}}									
+2057_1: {'pulse_blue': {'protocol': {'5': 30, '10': 30, '15': 30, '20': 30, '25': 30, '30': 30}}}
+2057_2: {'pulse_blue': {'protocol': {'5': 30,  '10': 30,  '15': 30,  '20': 30,  '25': 30,  '30': 30,  '40': 30,  '50': 30,  '60': 30}}}
+22915_1: {'pulse_blue': {'protocol': {'3': 30,  '5': 30,  '10': 30,  '15': 30,  '20': 30,  '25': 30,  '30': 30,  '35': 30,  '40': 30,  '45': 30}}}								
+22915_2: {'pulse_blue': {'protocol': {'10': 30,  '20': 30,  '30': 30,  '40': 30,  '50': 30,  '70': 30}}}
+2063_1: {'pulse_blue': {'protocol': {'2': 30,  '4': 30,  '6': 30,  '8': 30,  '10': 30,  '12': 30,  '15': 10,  '20': 10,  '25': 10}}}			
+1789_1: {'pulse_blue_1': {'protocol': {'5': 30,   '10': 30,   '15': 30,   '20': 30,   '25': 30,   '30': 30,   '35': 30,   '40': 20}},   'pulse_blue_2': {'protocol': {'40': 30,  '45': 30,  '50': 30,  '55': 30}}}										
+2057_3: {'pulse_blue': {'protocol': {'10': 30,  '20': 30,  '30': 30,  '40': 30,  '50': 30,  '60': 30}}}		
+4010_4: {'pulse_blue': {'protocol': {'5': 30,  '7': 30,  '10': 30,  '15': 30,  '20': 30,  '25': 30,  '30': 30,  '35': 30,  '40': 30,  '45': 30,  '50': 30,  '70': 30}}}					
+4010_5: {'protocol': {'3': 30,  '5': 30,  '10': 30,  '15': 30,  '20': 30,  '25': 30,  '30': 30}}}	
+22915_3_d: {'pulse_blue': {'protocol': {'7': 30,  '10': 30,  '15': 30,  '20': 30,  '25': 30,  '30': 30,  '40': 30,  '50': 30,  '70': 30}}}	
+2063_2: {'pulse_blue_1': {'protocol': {'4': 30}},   'pulse_blue_2': {'protocol': {'10': 30}},   'pulse_blue_3': {'protocol': {'25': 30}}}	
+4010_7: {'pulse_blue': {'protocol': {'5': 30,  '10': 30,  '15': 30,  '20': 30,  '30': 30,  '40': 30}}}			 										
+22915_4: {'pulse_blue': {'protocol': {'5': 30,  '10': 30,  '15': 30,  '20': 30,  '25': 30,  '30': 30,  '40': 30,  '50': 30,  '60': 30}}}										
+4010_8: {'pulse_blue': {'protocol': {'5': 30,  '10': 30,  '15': 30,  '20': 30,  '30': 30,  '40': 30,  '50': 30}}}										
+2057_4: {'pulse_blue': {'protocol': {'5': 30,  '10': 30,  '15': 30,  '20': 30,  '25': 30,  '30': 30,  '40': 30,  '50': 30}}}										
+22915_5: {'pulse_blue': {'protocol': {'10': 30,  '20': 30,  '30': 30,  '40': 30,  '50': 30}}}									
+4010_6_d: {'pulse_blue': {'protocol': {'10': 30,  '20': 30,  '30': 30,  '40': 30,  '50': 30,  '30_2': 30,  '40_2': 30}}}										
+2055_2_2: {'pulse_blue': {'protocol': {'7': 30,  '10': 30,  '15': 30,  '20': 30,  '50': 10}}}

+ 797 - 0
optogenetic/stim_periods_control_group.txt

@@ -0,0 +1,797 @@
+# stim intervals, timepoints in sampling frequency 32kHz
+
+{'24220_1': {'age': 12,
+  'hist': 'yes',
+  'hp_dataset': 'yes',
+  'pfc_dataset': 'no',
+  'recordings': {'pulse_blue': {'stim_protocol_dict': {'10': 30,
+     '20': 30,
+     '30': 30,
+     '40': 30,
+     '50': 30},
+    'stim_periods': array([[  712500,   716365],
+           [  909811,   913675],
+           [ 1107121,  1110985],
+           [ 1304431,  1308296],
+           [ 1501741,  1505606],
+           [ 1699052,  1702916],
+           [ 1896362,  1900226],
+           [ 2093672,  2097536],
+           [ 2290982,  2294847],
+           [ 2488294,  2492159],
+           [ 2685606,  2689471],
+           [ 2882918,  2886783],
+           [ 3080230,  3084095],
+           [ 3277542,  3281406],
+           [ 3474853,  3478718],
+           [ 3672165,  3676030],
+           [ 3869477,  3873342],
+           [ 4066789,  4070654],
+           [ 4264101,  4267966],
+           [ 4461414,  4465278],
+           [ 4658725,  4662590],
+           [ 4856037,  4859902],
+           [ 5053349,  5057214],
+           [ 5250661,  5254526],
+           [ 5447973,  5451838],
+           [ 5645286,  5649150],
+           [ 5842597,  5846462],
+           [ 6039909,  6043774],
+           [ 6237221,  6241086],
+           [ 6434533,  6438398],
+           [ 8598444,  8602309],
+           [ 8795755,  8799619],
+           [ 8993065,  8996930],
+           [ 9190376,  9194240],
+           [ 9387686,  9391550],
+           [ 9584996,  9588861],
+           [ 9782307,  9786172],
+           [ 9979618,  9983482],
+           [10176928, 10180792],
+           [10374240, 10378105],
+           [10571552, 10575417],
+           [10768865, 10772729],
+           [10966177, 10970042],
+           [11163489, 11167354],
+           [11360801, 11364667],
+           [11558114, 11561979],
+           [11755426, 11759291],
+           [11952739, 11956603],
+           [12150051, 12153915],
+           [12347363, 12351228],
+           [12544675, 12548540],
+           [12741987, 12745852],
+           [12939299, 12943164],
+           [13136612, 13140477],
+           [13333924, 13337789],
+           [13531236, 13535101],
+           [13728549, 13732414],
+           [13925861, 13929726],
+           [14123173, 14127038],
+           [14320485, 14324350],
+           [16484398, 16488262],
+           [16681708, 16685573],
+           [16879019, 16882884],
+           [17076330, 17080194],
+           [17273640, 17277504],
+           [17470950, 17474815],
+           [17668261, 17672126],
+           [17865572, 17869436],
+           [18062882, 18066747],
+           [18260194, 18264059],
+           [18457507, 18461371],
+           [18654819, 18658683],
+           [18852131, 18855995],
+           [19049443, 19053307],
+           [19246755, 19250620],
+           [19444067, 19447932],
+           [19641380, 19645245],
+           [19838692, 19842557],
+           [20036004, 20039869],
+           [20233317, 20237182],
+           [20430629, 20434494],
+           [20627941, 20631806],
+           [20825253, 20829118],
+           [21022566, 21026431],
+           [21219878, 21223743],
+           [21417191, 21421055],
+           [21614502, 21618367],
+           [21811815, 21815680],
+           [22009127, 22012992],
+           [22206439, 22210304],
+           [24370354, 24374219],
+           [24567665, 24571529],
+           [24764975, 24768840],
+           [24962286, 24966150],
+           [25159597, 25163461],
+           [25356907, 25360772],
+           [25554218, 25558083],
+           [25751530, 25755394],
+           [25948840, 25952705],
+           [26146153, 26150017],
+           [26343465, 26347330],
+           [26540777, 26544642],
+           [26738089, 26741954],
+           [26935402, 26939267],
+           [27132715, 27136580],
+           [27330028, 27333892],
+           [27527340, 27531205],
+           [27724652, 27728517],
+           [27921965, 27925830],
+           [28119277, 28123142],
+           [28316589, 28320454],
+           [28513902, 28517766],
+           [28711214, 28715079],
+           [28908527, 28912392],
+           [29105839, 29109705],
+           [29303152, 29307017],
+           [29500465, 29504330],
+           [29697778, 29701642],
+           [29895090, 29898955],
+           [30092403, 30096268],
+           [32256319, 32260184],
+           [32453630, 32457494],
+           [32650941, 32654805],
+           [32848252, 32852116],
+           [33045563, 33049427],
+           [33242873, 33246738],
+           [33440184, 33444049],
+           [33637495, 33641359],
+           [33834806, 33838670],
+           [34032118, 34035982],
+           [34229430, 34233295],
+           [34426742, 34430608],
+           [34624055, 34627920],
+           [34821368, 34825233],
+           [35018681, 35022545],
+           [35215993, 35219858],
+           [35413306, 35417170],
+           [35610618, 35614482],
+           [35807930, 35811795],
+           [36005242, 36009107],
+           [36202555, 36206420],
+           [36399868, 36403733],
+           [36597180, 36601045],
+           [36794493, 36798359],
+           [36991806, 36995671],
+           [37189119, 37192984],
+           [37386432, 37390297],
+           [37583745, 37587609],
+           [37781057, 37784922],
+           [37978370, 37982235]], dtype=int64)}}},
+ '24220_2': {'age': 12,
+  'hist': 'yes',
+  'hp_dataset': 'yes',
+  'pfc_dataset': 'no',
+  'recordings': {'pulse_blue': {'stim_protocol_dict': {'10': 30,
+     '20': 30,
+     '30': 30,
+     '40': 30,
+     '50': 30},
+    'stim_periods': array([[  677017,   680882],
+           [  874329,   878194],
+           [ 1071641,  1075506],
+           [ 1268953,  1272817],
+           [ 1466265,  1470129],
+           [ 1663577,  1667441],
+           [ 1860888,  1864753],
+           [ 2058200,  2062065],
+           [ 2255512,  2259377],
+           [ 2452825,  2456690],
+           [ 2650139,  2654004],
+           [ 2847452,  2851317],
+           [ 3044766,  3048631],
+           [ 3242080,  3245944],
+           [ 3439393,  3443258],
+           [ 3636706,  3640571],
+           [ 3834020,  3837884],
+           [ 4031333,  4035198],
+           [ 4228647,  4232511],
+           [ 4425960,  4429825],
+           [ 4623274,  4627139],
+           [ 4820587,  4824452],
+           [ 5017901,  5021765],
+           [ 5215214,  5219079],
+           [ 5412527,  5416392],
+           [ 5609841,  5613706],
+           [ 5807155,  5811020],
+           [ 6004468,  6008333],
+           [ 6201782,  6205646],
+           [ 6399095,  6402960],
+           [ 8563021,  8566886],
+           [ 8760333,  8764198],
+           [ 8957645,  8961509],
+           [ 9154957,  9158821],
+           [ 9352269,  9356133],
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+           [37989456, 37993321]], dtype=int64)}}}}

A diferenza do arquivo foi suprimida porque é demasiado grande
+ 5338 - 0
optogenetic/stim_periods_opsin_group.txt