OPETH_validation_data/readme.rtf

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\pard\sa200\sl276\slmult1\f0\fs22\lang9 Description of data\par
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Validation data provided here was used to generate figures for 'OPETH: Open Source Solution for Real-time Peri-event Time Histogram Based on Open Ephys' by Andr\'e1s Sz\'e9ll, Sergio Mart\'ednez-Bellver, Panna Heged\'fcs and Bal\'e1zs Hangya, depositied on bioRxiv:\par
{{\field{\*\fldinst{HYPERLINK https://www.biorxiv.org/content/10.1101/783688v1 }}{\fldrslt{https://www.biorxiv.org/content/10.1101/783688v1\ul0\cf0}}}}\f0\fs22\par
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The experimental data is provided in Cellbase format. CellBase software is a Matlab-based, open source data handling and analysis tool, and available at\par
{{\field{\*\fldinst{HYPERLINK https://github.com/hangyabalazs/CellBase }}{\fldrslt{https://github.com/hangyabalazs/CellBase\ul0\cf0}}}}\f0\fs22\par
See CellBase documentation for details on variable structure.\par
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The Behaviour/<sessionID> folder contains tetrode recordings in a behavioural recording sesssion:\par
event.mat contains TTL event timestamps.\par
TT1.mat, TT2.mat,... contains spike data from each tetrode.\par
TT1_1.mat,... contains spike data after spike sorting in MClust (A.D.Redish).\par
DBO07_190826a.mat contains raw behavioural data.\par
TrialEvents.mat contains Trial events structure (see CellBase).\par
StimEvents.mat contains Stimulus events structure (see CellBase).\par
EVENTSPIKES and STIMSPIKES files contain pre-aligned spike times (see CellBase).\par
The Tagging/<sessionID> folders contain tetrode recordings in optogenetic tagging sesssions in the same format.\par
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Description of code\par
lightpsth.m is included, which was used to calculated light-triggered PETH for unsorted tetrode data offline. All other code, including offline PETH tools for sorted data are part of MClust 3.5 (A.D Redish) or CellBase software packagages, available online.\par
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