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OPETH_validation_data
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readme.txt

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  1. Description of data
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  3. Validation data provided here was used to generate figures for 'OPETH: Open Source Solution for Real-time Peri-event Time Histogram Based on Open Ephys' by András Széll, Sergio Martínez-Bellver, Panna Hegedüs and Balázs Hangya, depositied on bioRxiv:
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  4. https://www.biorxiv.org/content/10.1101/783688v1
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  6. The experimental data is provided in Cellbase format. CellBase software is a Matlab-based, open source data handling and analysis tool, and available at
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  7. https://github.com/hangyabalazs/CellBase
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  8. See CellBase documentation for details on variable structure.
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  10. The Behaviour/<sessionID> folder contains tetrode recordings in a behavioural recording sesssion:
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  11. event.mat contains TTL event timestamps.
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  12. TT1.mat, TT2.mat,... contains spike data from each tetrode.
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  13. TT1_1.mat,... contains spike data after spike sorting in MClust (A.D.Redish).
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  14. DBO07_190826a.mat contains raw behavioural data.
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  15. TrialEvents.mat contains Trial events structure (see CellBase).
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  16. StimEvents.mat contains Stimulus events structure (see CellBase).
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  17. EVENTSPIKES and STIMSPIKES files contain pre-aligned spike times (see CellBase).
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  18. The Tagging/<sessionID> folders contain tetrode recordings in optogenetic tagging sesssions in the same format.
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  20. --- oo ---
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  22. Description of code
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  24. lightpsth.m is included, which was used to calculated light-triggered PETH for unsorted tetrode data offline. All other code, including offline PETH tools for sorted data are part of MClust 3.5 (A.D Redish) or CellBase software packagages, available online.
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