gin-scripts/create_research_repositories/create_researchrepo

#!/usr/bin/env bash

## prerequisite
## organisation with a team called readaccessteam that has read access to its repositories
## bot is owner of the organisation (Token used is linked to a profile with owner access)


set -euo pipefail

if (( $# < 1 )); then
    echo "Please provide a project name to create (one word, no spaces)"
    exit 1
fi

if (( $# > 3 )); then
    echo "Only one or two arguments is supported: Project name (one word, no spaces), project team, organisation"
fi

## Inputs
organisation=$1
projectname=$2

projectteam=$2
if (( $# > 2 )); then
    projectteam=$3
fi


    
## Variables

templaterepo="gin4rri/template"  # name of template repository

# Token can be created in GIN user settings, under Applications.
# An organisation admin account is required to create teams.
token="f5058edf6a8e7e6ea2c52af474039902b2aa923b"

# Change this to the local installation addresses to test locally.
# Include the protocol scheme http:// or https:// and the port if it's not
# standard for the protocol.
ginhost="https://gin.g-node.org"

# Same as above, change to local address to test locally and include port
# number if it's not 22.
ginssh="gin.g-node.org"



post() {
    data=$1
    url=$2
    curl -H "Content-Type: application/jsonAuthorization" -H "Authorization: token ${token}" -d "${data}" ${url}
}

put() {
    url=$1
    curl -X PUT -H "Authorization: token ${token}"  -d "${url}"
}

createrepo() {
    reponame=$1
    data="{\"Name\":\"${reponame}\",\"Description\":\"deleteme\",\"Private\":true}"
    post ${data} ${ginhost}/api/v1/org/${organisation}/repos
}

createteam() {
    teamname=$1
    data="{\"name\":\"${teamname}\",\"description\":\"deleteme\",\"permission\":\"admin\"}"
    post ${data} ${ginhost}/api/v1/orgs/${organisation}/teams
    echo
}

addrepototeam (){
    reponame=$1
    teamname=$2
    # TODO https://github.com/gogs/docs-api/blob/master/Administration/Teams.md needs admin rights?
    # PUT /admin/teams/:teamid/repos/:reponame
    #data="{\"Name\":\"${teamname}\",\"Description\":\"deleteme\"}"
    #post ${data} ${ginhost}/api/v1/admin/orgs/${organisation}/teams
}

issuetrackeroption (){
    reponame=$1
    enable_issuesopt=$2
    # todo https://github.com/gogs/docs-api/tree/master/Repositories
    # PATCH /repos/:owner/:repo/issue-tracker
    # enable_issues = false
    ## maybe link to parent issue tracker instead ?
}

echo "Creating team ${projectname} if it does not already exist"
##TODO: check team existence:
createteam ${projectname}


echo "Creating project ${projectname}"
createrepo ${projectname}
addrepototeam ${projectname} ${projectname}

echo "Creating raw submodule ${projectname}.raw"
createrepo ${projectname}.raw
addrepototeam ${projectname}.raw ${projectname}
issuetrackeroption ${projectname}.raw false

echo "Creating shared submodule ${projectname}.shared"
createrepo ${projectname}.shared
addrepototeam ${projectname}.shared ${projectname}
addrepototeam ${projectname}.shared readaccessteam # add also to the team with read access in the organisation
issuetrackeroption ${projectname}.shared false




projectdir=${HOME}/datasets/${projectname}

# Clone template
echo "Downloading template repository to ${projectdir}"
datalad install --recursive --source git@${ginssh}:/${templaterepo} ${projectdir}

# change remote URL to project repo and init annex
echo "Configuring new project directory"
git -C ${projectdir} remote set-url origin git@${ginssh}:/${organisation}/${projectname}
git -C ${projectdir} annex init

# change submodule URLs and init annex
echo "Configuring project directories"
git -C ${projectdir} submodule set-url raw git@${ginssh}:/${organisation}/${projectname}.raw
git -C ${projectdir} submodule set-url shared git@${ginssh}:/${organisation}/${projectname}.shared
git -C ${projectdir} submodule sync
git -C ${projectdir} submodule foreach git annex init

datalad -C ${projectdir} add --to-git .gitmodules --message "Initialise submodules"
datalad -C ${projectdir} publish --recursive