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@@ -398,8 +398,9 @@ summary {
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<li><a href="#user-inputs"><span class="toc-section-number">4.2.1</span> user inputs</a></li>
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<li><a href="#create-repository"><span class="toc-section-number">4.2.2</span> create repository</a></li>
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</ul></li>
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-<li><a href="#add-specific-submodule-to-a-research-repository"><span class="toc-section-number">4.3</span> Add specific submodule to a research repository ()</a></li>
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-<li><a href="#clone-research-repositories"><span class="toc-section-number">4.4</span> Clone research repositories ()</a></li>
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+<li><a href="#add-existing-lab-submodule-to-a-research-repository"><span class="toc-section-number">4.3</span> Add existing (lab) submodule to a research repository ()</a></li>
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+<li><a href="#add-specific-submodule-to-a-research-repository"><span class="toc-section-number">4.4</span> Add specific submodule to a research repository ()</a></li>
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+<li><a href="#clone-research-repositories"><span class="toc-section-number">4.5</span> Clone research repositories ()</a></li>
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</ul></li>
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</ul>
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</div>
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@@ -583,8 +584,22 @@ addusertoteam ${thisorga} writeaccess ${newuser}
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</ul>
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</div>
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</div>
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-<div id="add-specific-submodule-to-a-research-repository" class="section level2" number="4.3">
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-<h2><span class="header-section-number">4.3</span> Add specific submodule to a research repository ()</h2>
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+<div id="add-existing-lab-submodule-to-a-research-repository" class="section level2" number="4.3">
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+<h2><span class="header-section-number">4.3</span> Add existing (lab) submodule to a research repository ()</h2>
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+<p>input:</p>
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+<ul>
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+<li>submodule address</li>
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+<li>folder name in parent repository</li>
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+</ul>
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+<p>logic:</p>
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+<ul>
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+<li>if needed: download repository on /temp</li>
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+<li>add submodule with git submodule add</li>
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+<li>sync to gin</li>
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+</ul>
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+</div>
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+<div id="add-specific-submodule-to-a-research-repository" class="section level2" number="4.4">
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+<h2><span class="header-section-number">4.4</span> Add specific submodule to a research repository ()</h2>
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<ul>
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<li>input: submodule template + folder name in parent repository + parent repository</li>
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<li>automatic extra: teamid of team with write access to parent repository</li>
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@@ -597,11 +612,11 @@ addusertoteam ${thisorga} writeaccess ${newuser}
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<li>downlaod repository on /temp</li>
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<li>clone template into it (including git-annex behavior)</li>
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<li>sync to gin (change remote URL to project repo, git annex init)</li>
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-<li>add submodule to parent repository</li>
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+<li>add submodule to parent repository (see above)</li>
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</ul>
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</div>
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-<div id="clone-research-repositories" class="section level2" number="4.4">
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-<h2><span class="header-section-number">4.4</span> Clone research repositories ()</h2>
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+<div id="clone-research-repositories" class="section level2" number="4.5">
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+<h2><span class="header-section-number">4.5</span> Clone research repositories ()</h2>
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<ul>
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<li>clone parent repository</li>
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<li>update submodules</li>
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