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- # As their name says, fields with the "_mandatory" arguments are... mandatory
- # Other fields are optional and can be commented by putting a "#" in front of them
- [DataInput]
- experiment_version_mandatory = "v2019.07:2p_imaging_head_fixed+Max"
- microscope_filepath_mandatory = "./data/v2019_07-2p-Max/TSeries-02042020-1448-001_trim.xml"
- teensy_filepath_mandatory = "./data/v2019_07-2p-Max/serialdata_m8_trim.txt"
- suite2pNpy_directory_mandatory = "./data/v2019_07-2p-Max/suite2p_trim"
- nwb_output_filepath_mandatory = "./data/v2019_07-2p-Max/output.nwb"
- [NWBFile]
- session_description_mandatory = "My awesome session"
- lab = "Fleischmann Lab"
- institution = "Brown University"
- timezone = "EST"
- experimenter = ""
- experiment_description = ""
- [Subject]
- age = "73w (ended)"
- description = "Mouse #8"
- genotype = "tdTomato +/-"
- sex = "male"
- species = "mouse"
- subject_id = 8
- weight = 31 # [grams]
- date_of_birth = 2019-02-18
- [Imaging]
- Device.Type_mandatory = "Microscope"
- Device.Description = "Ultima Investigator"
- Device.Manufacturer = "Bruker"
- OpticalChannelDescription_mandatory = "GCaMP/Green, tdTomado/red"
- emission_lambda_mandatory = 520
- PlaneDescription_mandatory = "My awesome imaging plane"
- CalciumIndicator_mandatory = "jGCaMP7f"
- ImagingLocation_mandatory = "PCX"
- grid_spacing = [2.0, 2.0, 30.0] # Space between pixels in (x, y) or voxels in (x, y, z) directions, in the specified unit, assumes imaging plane is a regular grid
- grid_spacing_unit = "microns" # Measurement units for `grid_spacing`, the default value is [meters]
- reference_frame = "" # Describes position and reference frame of manifold based on position of first element in manifold
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