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- [DataInput]
- experiment_version = "v2019.07:2p_imaging_head_fixed+Max"
- microscope_filepath = "./data/v2019_07-2p-Max/TSeries-02042020-1448-001_trim.xml"
- teensy_filepath = "./data/v2019_07-2p-Max/serialdata_m8_trim.txt"
- suite2pNpy_directory = "./data/v2019_07-2p-Max/suite2p_trim"
- nwb_output_filepath = "./data/v2019_07-2p-Max/output-disable-h5io.nwb"
- [NWBFile]
- session_description = "My awesome session"
- lab = "Fleischmann Lab"
- institution = "Brown University"
- timezone = "EST"
- experimenter = "Fleischmann, Juniper"
- experiment_description = "My awesome experiment"
- [Subject]
- age = "P73W"
- description = "Mouse #8"
- genotype = "tdTomato +/-"
- sex = "M"
- species = "Mus musculus"
- subject_id = 8
- weight = 31 # [grams]
- date_of_birth = 2019-02-18
- [Imaging]
- Device.Type = "Microscope"
- Device.Description = "Ultima Investigator"
- Device.Manufacturer = "Bruker"
- OpticalChannelDescription = "GCaMP/Green, tdTomado/red"
- emission_lambda = 520
- PlaneDescription = "My awesome imaging plane"
- CalciumIndicator = "jGCaMP7f"
- ImagingLocation = "PCX"
- grid_spacing = [2.0, 2.0, 30.0] # Space between pixels in (x, y) or voxels in (x, y, z) directions, in the specified unit, assumes imaging plane is a regular grid
- grid_spacing_unit = "microns" # Measurement units for `grid_spacing`, the default value is [meters]
- reference_frame = "" # Describes position and reference frame of manifold based on position of first element in manifold
- [H5IO]
- enable = false
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