calimag-testdata/v2019_07-2p-Max/config.toml

[DataInput]
    experiment_version = "v2019.07:2p_imaging_head_fixed+Max"
    microscope_filepath = "./data/v2019_07-2p-Max/TSeries-02042020-1448-001_trim.xml"
    teensy_filepath = "./data/v2019_07-2p-Max/serialdata_m8_trim.txt"
    suite2pNpy_directory = "./data/v2019_07-2p-Max/suite2p_trim"
    nwb_output_filepath = "./data/v2019_07-2p-Max/output.nwb"

[NWBFile]
    session_description = "My awesome session"
    lab = "Fleischmann Lab"
    institution = "Brown University"
    timezone = "EST"
    experimenter = "Fleischmann, Juniper"
    experiment_description = "My awesome experiment"

[Subject]
    age = "P73W"
    description = "Mouse #8"
    genotype = "tdTomato +/-"
    sex = "M"
    species = "Mus musculus"
    subject_id = 8
    weight = 31 # [grams]
    date_of_birth = 2019-02-18

[Imaging]
    Device.Type = "Microscope"
    Device.Description = "Ultima Investigator"
    Device.Manufacturer = "Bruker"
    OpticalChannelDescription = "GCaMP/Green, tdTomado/red"
    emission_lambda = 520
    PlaneDescription = "My awesome imaging plane"
    CalciumIndicator = "jGCaMP7f"
    ImagingLocation = "PCX"
    grid_spacing = [2.0, 2.0, 30.0]  # Space between pixels in (x, y) or voxels in (x, y, z) directions, in the specified unit, assumes imaging plane is a regular grid
    grid_spacing_unit = "microns"  # Measurement units for `grid_spacing`, the default value is [meters]
    reference_frame = "" # Describes position and reference frame of manifold based on position of first element in manifold