| 1 |
- {"general": {"template_name": "Juna_Chimp"}, "short_preparation_pipe": {"crop_aladin_T1": {"nac_flag": true, "rig_only_flag": true, "nosym_flag": true, "ln_val": 12, "lp_val": 10, "smoo_r_val": 1.0}, "crop_z_T1": {"brainsize": 100}}, "debias": {"s": 4}, "reg": {"n": 2, "m": "ref", "dof": 12}, "old_segment_pipe": {"segment": {"gm_output_type": [false, false, true], "wm_output_type": [false, false, true], "csf_output_type": [false, false, true]}, "threshold_gm": {"thresh": 0.5}, "threshold_wm": {"thresh": 0.5}, "threshold_csf": {"thresh": 0.5}}, "mask_from_seg_pipe": {"dilate_mask": {"kernel_shape": "sphere", "kernel_size": 2}, "erode_mask": {"kernel_shape": "sphere", "kernel_size": 2}, "merge_indexed_mask": {"index_csf": 1, "index_gm": 2, "index_wm": 3}}}
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