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- <ngaus>[1 1 2 3 4 2]</ngaus>
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- <uhrlim>1.4</uhrlim>
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- <species>human</species>
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- <shootingsurf>Template_T1</shootingsurf>
- <pth_templates>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym</pth_templates>
- <darteltpm>
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- </darteltpm>
- <shootingtpm>
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- </shootingtpm>
- <shootingT1>
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- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
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- </cat12atlas>
- <pbtres>0.5</pbtres>
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- <verb>2</verb>
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- <fontsize>10</fontsize>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
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- <td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
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- <td>
- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
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- <td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
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- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>[false]</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>HCP</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot</td>
- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
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- <td>1</td>
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- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_400P_17N</td>
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- <td>1</td>
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- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
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- <td>0</td>
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- <optimal>[1 0.3]</optimal>
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- <res_BB>0</res_BB>
- <tissue_mn>[2.74399995803833 18.5168972015381 36.8466186523438 63.247631072998]</tissue_mn>
- <tissue_mnr>[0.043385025113821 0.292768239974976 0.582577049732208 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[1.31674673331351 11.9315467810596 7.99350179917811 5.93057864507193]</tissue_std>
- <tissue_stdr>[0.0217631030827761 0.197203814983368 0.132116064429283 0.0980202108621597]</tissue_stdr>
- <contrast>21.8876323699951</contrast>
- <contrastr>0.346062481403351</contrastr>
- <NCR>0.163843423128128</NCR>
- <ICR>0.486247986555099</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[1.875 1.80000305175781 1.875]</res_vx_vol>
- <res_RMS>1.8503387965755</res_RMS>
- <res_BB>0.5</res_BB>
- <tissue_mn>[8.612961769104 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.62399992998851 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>2.89239597320557</contrastr>
- <NCR>2.68308115005493</NCR>
- <ICR>1.66579365730286</ICR>
- <SurfaceEulerNumber>6.40816326530612</SurfaceEulerNumber>
- <SurfaceDefectArea>2.02750716258668</SurfaceDefectArea>
- <SurfaceDefectNumber>2.8</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.92242741584778</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>2.45168304443359</SurfacePositionRMSE>
- <IQR>2.47578950129234</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>1980</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20220709-192838</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>108</SurfaceEulerNumber>
- <SurfaceDefectArea>4.11002865034674</SurfaceDefectArea>
- <SurfaceDefectNumber>36</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0961213707923889</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.122584149241447</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>108</EC_abs>
- <defect_size>4.11002865034674</defect_size>
- <vol_abs_CGW>[142.173809748099 725.973945788031 413.041811491812 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.537897741005701</vol_abs_WMH>
- <vol_rel_WMH>0.000419842429917297</vol_rel_WMH>
- <surf_TSA>1822.01874256559</surf_TSA>
- <vol_TIV>1281.18956702794</vol_TIV>
- <vol_rel_CGW>[0.110970158832864 0.566640538193048 0.322389302974088 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.62521162265856 0.705622246357784]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.67929339408875 0.935039691114316 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.84643542283775 0.35382100902421 0.250682473566165;2.64103438469009 0.215156780980089 0.429932713873758;3.37984684893904 0.308291191791304 0.319384812560077]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.670760594408495 0.263495941276238 0.720269569725246;4.24471320109159 0.215829202647173 0.279730430274754]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.32900191453418</vol_TIV>
- <vol_rel_CGW>[0.5 8.02659012559353 3.63989409077026 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.04198424299173</vol_rel_WMH>
- <surf_TSA>8.59445117161912</surf_TSA>
- <SQR>6.56533415230063</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0.17340874671936 1 1 10969.7441842407 0.541922718746737]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.0433871820569038 0.0415342450141907 0.265687346458435]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[840.118959624057 386.904147922028 249.981971158526 998.684216739719 1706.89181289809 9604.83800974501]</SPMvols0>
- <SPMvols1>[746.088474260972 359.815685061015 135.5221791004 917.889256803516 1254.61095337692 9858.40796561719]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[19.2796993255615 41.244701385498 60.407398223877]</T3th>
- <Tth>
- <T3th>[0 1.49502944946289 3.10697412490845 19.2796993255615 41.244701385498 60.407398223877 80.9712524414062 259.204467773438]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0161970723420382 0.0492980927228928 0.0533219575881958 0 0]</dtc>
- <ll>[0.0800502024540285 0 0.0800502024540285 0;0.195786090315032 0.00737132831495635 0.203157418629989 1571.92102050781;0.195786090315032 0.00737132831495635 0.203157418629989 1571.92102050781]</ll>
- <rmsdtc>[0.0411531440913677 0.0673971623182297 0.0776603445410728]</rmsdtc>
- <rmsgdt>[0.030131746083498 0.0380432792007923 0.0482578091323376]</rmsgdt>
- <rmsdt>0.0776603445410728</rmsdt>
- <dt>0.0533219575881958</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00655055651441216 0.0214238855987787 0.0319450683891773 0.0428568422794342 0.0522178448736668 0.0578793212771416]</dtc>
- <ll>[0.0828000457758532 0 0.0828000457758532 0;0.219009249084249 0.0105641836462149 0.229573432730464 5407.54150390625;0.203893080669768 0.0137933849212428 0.217686465591011 9927.2646484375;0.185759048969091 0.0170879545148395 0.202847003483931 18425.462890625;0.17042284704688 0.0207349896826141 0.191157836729494 36272.81640625;0.17042284704688 0.0207349896826141 0.191157836729494 36272.81640625]</ll>
- <rmsdtc>[0.00801464729011059 0.0267691984772682 0.044010017067194 0.0721659809350967 0.100896425545216 0.108168415725231]</rmsdtc>
- <rmsgdt>[0.00282640219666064 0.0110697858035564 0.0266565401107073 0.0497241951525211 0.0719446614384651 0.0793164893984795]</rmsgdt>
- <rmsdt>0.108168415725231</rmsdt>
- <dt>0.0578793212771416</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r1980: 1/1: ./dir_16316/ds/sub-1296/sub-1296_ses-01_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 176s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 8s</item>
- <item>Estimate background 9s</item>
- <item>Initial correction 15s</item>
- <item>Refine background 4s</item>
- <item>Final correction 9s</item>
- <item>Final scaling 8s</item>
- <item>62s</item>
- <item>Correct center-of-mass 5s</item>
- <item>Affine registration 16s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 10s</item>
- <item>Use initial fine affine registration. 72s</item>
- <item>SPM preprocessing 1 (estimate 2): 78s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 22s</item>
- <item>Update Segmentation 22s</item>
- <item>Update Skull-Stripping 54s</item>
- <item>Update probability maps 12s</item>
- <item>109s</item>
- <item>Global intensity correction: 22s</item>
- <item>SANLM denoising after intensity normalization (medium): 13s</item>
- <item>Fast Optimized Shooting registration 35s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 4s</item>
- <item>Prepare partitions 7s</item>
- <item>Prepare segments (LASmod = 1.00) 16s</item>
- <item>Estimate local tissue thresholds (WM) 24s</item>
- <item>Estimate local tissue thresholds (GM) 34s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 40s</item>
- <item>130s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 9s</item>
- <item>Major structures 4s</item>
- <item>Ventricle detection 17s</item>
- <item>Blood vessel detection 10s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 35s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 2s</item>
- <item>Side alignment 4s</item>
- <item>Final corrections 6s</item>
- <item>86s</item>
- <item>Blood vessel correction (BVCstr=0.50): 2s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.05): 35s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.06,0.68 0.07,0.98 0.05]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 5s</item>
- <item>Level 1 cleanup (brain masking) 3s</item>
- <item>Level 2 cleanup (CSF correction) 2s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 3s</item>
- <item>12s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0828 0.0000 0.0828 | 32.0000</item>
- <item>2 | 2.50 | 0.0798 0.0012 0.0810 | 29.4886</item>
- <item>3 | 2.50 | 0.0790 0.0018 0.0808 | 26.9772</item>
- <item>4 | 2.50 | 0.0787 0.0019 0.0806 | 24.6107</item>
- <item>5 | 2.50 | 0.0784 0.0020 0.0804 | 22.6548</item>
- <item>6 | 2.50 | 0.0782 0.0020 0.0803 | 20.6989</item>
- <item>7 | 2.50 | 0.0780 0.0021 0.0801 | 18.9688</item>
- <item>8 | 2.50 | 0.0778 0.0021 0.0799 | 17.4455</item>
- <item>9 | 2.50 | 0.0776 0.0021 0.0797 | 15.9223</item>
- <item>10 | 2.50 | 0.0773 0.0022 0.0795 | 14.6627</item>
- <item>11 | 2.50 | 0.0771 0.0022 0.0793 | 13.4764</item>
- <item>12 | 2.50 | 0.0769 0.0022 0.0791 | 12.3015</item>
- <item>13 | 2.50 | 0.0766 0.0023 0.0789 | 11.3776</item>
- <item>14 | 2.50 | 0.0764 0.0023 0.0787 | 10.4537</item>
- <item>15 | 2.25 | 0.0755 0.0023 0.0779 | 9.5920</item>
- <item>16 | 2.25 | 0.0730 0.0035 0.0765 | 8.8725</item>
- <item>29 | 2.00 | 0.0752 0.0016 0.0767 | 3.3283</item>
- <item>30 | 2.00 | 0.0697 0.0038 0.0734 | 3.1221</item>
- <item>31 | 2.00 | 0.0680 0.0046 0.0726 | 2.9160</item>
- <item>43 | 1.75 | 0.0676 0.0026 0.0702 | 1.5785</item>
- <item>44 | 1.75 | 0.0632 0.0050 0.0682 | 1.5194</item>
- <item>45 | 1.75 | 0.0619 0.0057 0.0676 | 1.4626</item>
- <item>57 | 1.50 | 0.0610 0.0041 0.0651 | 1.0900</item>
- <item>58 | 1.50 | 0.0578 0.0062 0.0640 | 1.0730</item>
- <item>59 | 1.50 | 0.0568 0.0069 0.0637 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 152s</item>
- <item>Prepare output 11s</item>
- <item>163s</item>
- <item>Jacobian determinant (RMS): 0.008 0.027 0.044 0.072 0.101 | 0.108168</item>
- <item>Template Matching: 0.083 0.219 0.204 0.186 0.170 | 0.170423</item>
- <item>Write result maps: 31s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 27s</item>
- <item>CSF distance: 14s</item>
- <item>PBT2x thickness: 42s</item>
- <item>88s</item>
- <item>Create initial surface 77s</item>
- <item>Topology correction: 91s</item>
- <item>Surface refinement: 105s</item>
- <item>Reduction of surface collisions with optimization: 70s</item>
- <item>Spherical mapping with areal smoothing 90s</item>
- <item>Spherical registration 306s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 26s</item>
- <item>CSF distance: 14s</item>
- <item>PBT2x thickness: 41s</item>
- <item>87s</item>
- <item>Create initial surface 77s</item>
- <item>Topology correction: 95s</item>
- <item>Surface refinement: 104s</item>
- <item>Reduction of surface collisions with optimization: 68s</item>
- <item>Spherical mapping with areal smoothing 77s</item>
- <item>Spherical registration 290s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.6252 0.7040 mm</item>
- <item>Surface intensity / position RMSE: 0.0961 / 0.1226</item>
- <item>Euler number / defect number / defect size: 108.0 / 36.0 / 4.11%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_16316/ds/sub-1296/surf/lh.thickness.sub-1296_ses-01_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_16316/ds/sub-1296/surf/rh.thickness.sub-1296_ses-01_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_16316/ds/sub-1296/sub-1296_ses-01_T1w.nii</item>
- <item>Surface ROI estimation: 8s</item>
- <item>Surface and thickness estimation takes: 1723s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 11s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 42s</item>
- <item>ROI estimation of 'lpba40' atlas 12s</item>
- <item>ROI estimation of 'hammers' atlas 29s</item>
- <item>ROI estimation of 'thalamus' atlas 2s</item>
- <item>ROI estimation of 'ibsr' atlas 10s</item>
- <item>ROI estimation of 'aal3' atlas 17s</item>
- <item>ROI estimation of 'mori' atlas 25s</item>
- <item>ROI estimation of 'anatomy3' atlas 36s</item>
- <item>ROI estimation of 'julichbrain' atlas 48s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 19s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 33s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 75s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 112s</item>
- <item>Write results 113s</item>
- <item>473s</item>
- <item>Quality check: 5s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_16316/ds/sub-1296/report/catreport_sub-1296_ses-01_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 57 minute(s) and 14 second(s).</item>
- <item>Image Quality Rating (IQR): 80.24% (B-)</item>
- <item>GM volume (GMV): 56.66% (725.97 / 1281.19 ml)</item>
- <item>GM thickness (GMT): 2.63 0.71 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_16316/ds/sub-1296/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_16316/ds/sub-1296/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_16316/ds/sub-1296/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
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