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- <ngaus>[1 1 2 3 4 2]</ngaus>
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- <uhrlim>1.4</uhrlim>
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- <resval>[1 0.3]</resval>
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- <species>human</species>
- <APP>1070</APP>
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- <shootingsurf>Template_T1</shootingsurf>
- <pth_templates>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym</pth_templates>
- <darteltpm>
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- </darteltpm>
- <shootingtpm>
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- </shootingtpm>
- <shootingT1>
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- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
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- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
- </cat12atlas>
- <pbtres>0.5</pbtres>
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- <report/>
- <verb>2</verb>
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- <fontsize>10</fontsize>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
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- <td>
- <item>csf</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
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- <td>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
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- <item>csf</item>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
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- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>[false]</td>
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- <td>1</td>
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- <td>1</td>
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- <td>Desikan</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>HCP</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
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- <td>1</td>
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- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
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- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <optimal>[1 0.3]</optimal>
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- <res_BB>0</res_BB>
- <tissue_mn>[2.64800000190735 16.0205860137939 32.805362701416 57.004207611084]</tissue_mn>
- <tissue_mnr>[0.046452708542347 0.281042158603668 0.575490176677704 0.999999940395355]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[1.25744883894375 9.4463740574403 7.34416918442385 5.40370516344014]</tissue_std>
- <tissue_stdr>[0.0231334902346134 0.173786476254463 0.1351118683815 0.0994128435850143]</tissue_stdr>
- <contrast>19.6262836456299</contrast>
- <contrastr>0.34429532289505</contrastr>
- <NCR>0.136276468634605</NCR>
- <ICR>0.554357886314392</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[1.87500005538402 1.79998566280806 1.875]</res_vx_vol>
- <res_RMS>1.85033317666528</res_RMS>
- <res_BB>0.5</res_BB>
- <tissue_mn>[8.60561275482178 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.62399959313993 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>2.91890335083008</contrastr>
- <NCR>2.28734540939331</NCR>
- <ICR>1.83471703529358</ICR>
- <SurfaceEulerNumber>9.36734693877551</SurfaceEulerNumber>
- <SurfaceDefectArea>2.18257230412457</SurfaceDefectArea>
- <SurfaceDefectNumber>4.05</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.80471634864807</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>2.29810237884521</SurfacePositionRMSE>
- <IQR>2.14211806979769</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>1980</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20220709-200338</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>166</SurfaceEulerNumber>
- <SurfaceDefectArea>4.73028921649828</SurfaceDefectArea>
- <SurfaceDefectNumber>61</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0902358144521713</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.114905118942261</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>166</EC_abs>
- <defect_size>4.73028921649828</defect_size>
- <vol_abs_CGW>[236.227186595827 858.843086015577 509.619094328124 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.75274310693358</vol_abs_WMH>
- <vol_rel_WMH>0.00046908960851982</vol_rel_WMH>
- <surf_TSA>2173.65480680302</surf_TSA>
- <vol_TIV>1604.68936693953</vol_TIV>
- <vol_rel_CGW>[0.147210538975752 0.535208311159665 0.317581149864582 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.62161532557751 0.725716285517737]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.69493007659912 0.961617736852283 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.7710410135868 0.364147008626201 0.232823082220379;2.62688979635607 0.222520528692191 0.427835526708203;3.37118419269025 0.308429646621595 0.339341391071419]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.647029371082361 0.217093013128407 0.718379790940767;4.22327316150258 0.211516372261155 0.281620209059233]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.93562638024197</vol_TIV>
- <vol_rel_CGW>[0.5 7.4620745538733 3.55354076624609 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.04690896085198</vol_rel_WMH>
- <surf_TSA>8.62384707382264</surf_TSA>
- <SQR>6.10424179925945</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0.184483289718628 1 1 10822.6689980973 0.520761879523996]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.0469598844647408 0.0454626306891441 0.264079540967941]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[1043.04636333482 439.071895820563 435.413837420721 635.575858606865 2226.25027392772 9338.69707176496]</SPMvols0>
- <SPMvols1>[881.270226617596 405.676573078072 252.732263557968 507.882912564597 1146.32118894176 10079.2405097781]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[16.7991008758545 37.9023017883301 56.4420013427734]</T3th>
- <Tth>
- <T3th>[0 0 2.85874629020691 16.7991008758545 37.9023017883301 56.4420013427734 76.2634506225586 257.248046875]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.015482653863728 0.0651741623878479 0.072030320763588 0 0]</dtc>
- <ll>[0.0904469026380083 0 0.0904469026380083 0;0.214699789828041 0.0132580112580921 0.227957801086133 2827.24438476562;0.214699789828041 0.0132580112580921 0.227957801086133 2827.24438476562]</ll>
- <rmsdtc>[0.0402311943471432 0.109892003238201 0.129296913743019]</rmsdtc>
- <rmsgdt>[0.0298383384943008 0.0817125216126442 0.106526710093021]</rmsgdt>
- <rmsdt>0.129296913743019</rmsdt>
- <dt>0.072030320763588</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00595402810722589 0.0353007279336452 0.0385078005492687 0.0524237044155598 0.062858983874321 0.0701915249228477]</dtc>
- <ll>[0.0921350470866454 0 0.0921350470866454 0;0.224293681318681 0.0199857734279609 0.244279454746642 10230.2177734375;0.222269528471111 0.0220052322144135 0.244274760685524 15837.4296875;0.197618779746669 0.0252813355535524 0.222900115300221 27260.15625;0.179167865919571 0.0293949324586004 0.208562798378172 51422.11328125;0.179167865919571 0.0293949324586004 0.208562798378172 51422.11328125]</ll>
- <rmsdtc>[0.00798148009926081 0.0369929075241089 0.0809079706668854 0.120594926178455 0.16232967376709 0.17512334883213]</rmsdtc>
- <rmsgdt>[0.00377605971880257 0.0198338497430086 0.0530858486890793 0.0850435867905617 0.119223214685917 0.1373191177845]</rmsgdt>
- <rmsdt>0.17512334883213</rmsdt>
- <dt>0.0701915249228477</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r1980: 1/1: ./dir_29589/ds/sub-1282/sub-1282_ses-01_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 135s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 8s</item>
- <item>Estimate background 9s</item>
- <item>Initial correction 16s</item>
- <item>Refine background 5s</item>
- <item>Final correction 10s</item>
- <item>Final scaling 8s</item>
- <item>66s</item>
- <item>Correct center-of-mass 5s</item>
- <item>Affine registration 21s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 90s</item>
- <item>SPM preprocessing 1 (estimate 2): 71s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 22s</item>
- <item>Update Segmentation 24s</item>
- <item>Update Skull-Stripping 54s</item>
- <item>Update probability maps 11s</item>
- <item>111s</item>
- <item>Global intensity correction: 22s</item>
- <item>SANLM denoising after intensity normalization (medium): 12s</item>
- <item>Fast Optimized Shooting registration 35s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 5s</item>
- <item>Prepare partitions 7s</item>
- <item>Prepare segments (LASmod = 1.14) 18s</item>
- <item>Estimate local tissue thresholds (WM) 24s</item>
- <item>Estimate local tissue thresholds (GM) 37s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 38s</item>
- <item>133s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 10s</item>
- <item>Major structures 4s</item>
- <item>Ventricle detection 23s</item>
- <item>Blood vessel detection 12s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.11) 37s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 2s</item>
- <item>Side alignment 4s</item>
- <item>Final corrections 6s</item>
- <item>99s</item>
- <item>Blood vessel correction (BVCstr=0.50): 2s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.06): 44s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.05,0.68 0.08,0.98 0.05]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 6s</item>
- <item>Level 1 cleanup (brain masking) 3s</item>
- <item>Level 2 cleanup (CSF correction) 2s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 4s</item>
- <item>14s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0921 0.0000 0.0921 | 32.0000</item>
- <item>2 | 2.50 | 0.0880 0.0015 0.0895 | 29.4886</item>
- <item>3 | 2.50 | 0.0868 0.0022 0.0891 | 26.9772</item>
- <item>4 | 2.50 | 0.0863 0.0025 0.0888 | 24.6107</item>
- <item>5 | 2.50 | 0.0859 0.0026 0.0885 | 22.6548</item>
- <item>6 | 2.50 | 0.0856 0.0027 0.0882 | 20.6989</item>
- <item>7 | 2.50 | 0.0853 0.0027 0.0880 | 18.9688</item>
- <item>8 | 2.50 | 0.0849 0.0028 0.0877 | 17.4455</item>
- <item>9 | 2.50 | 0.0846 0.0029 0.0874 | 15.9223</item>
- <item>10 | 2.50 | 0.0842 0.0029 0.0872 | 14.6627</item>
- <item>11 | 2.50 | 0.0839 0.0030 0.0869 | 13.4764</item>
- <item>12 | 2.50 | 0.0835 0.0030 0.0865 | 12.3015</item>
- <item>13 | 2.50 | 0.0832 0.0031 0.0863 | 11.3776</item>
- <item>14 | 2.50 | 0.0828 0.0031 0.0860 | 10.4537</item>
- <item>15 | 2.25 | 0.0861 0.0033 0.0894 | 9.5920</item>
- <item>16 | 2.25 | 0.0818 0.0054 0.0873 | 8.8725</item>
- <item>17 | 2.25 | 0.0804 0.0061 0.0865 | 8.1530</item>
- <item>18 | 2.25 | 0.0795 0.0063 0.0858 | 7.5234</item>
- <item>19 | 2.25 | 0.0788 0.0065 0.0853 | 6.9630</item>
- <item>20 | 2.25 | 0.0781 0.0065 0.0846 | 6.4027</item>
- <item>21 | 2.25 | 0.0775 0.0066 0.0841 | 5.9447</item>
- <item>22 | 2.25 | 0.0769 0.0066 0.0835 | 5.5083</item>
- <item>23 | 2.25 | 0.0763 0.0066 0.0830 | 5.0803</item>
- <item>24 | 2.25 | 0.0758 0.0067 0.0825 | 4.7404</item>
- <item>25 | 2.25 | 0.0753 0.0067 0.0820 | 4.4005</item>
- <item>26 | 2.25 | 0.0748 0.0067 0.0814 | 4.0868</item>
- <item>29 | 2.00 | 0.0776 0.0056 0.0832 | 3.3283</item>
- <item>30 | 2.00 | 0.0741 0.0073 0.0814 | 3.1221</item>
- <item>43 | 1.75 | 0.0739 0.0040 0.0779 | 1.5785</item>
- <item>44 | 1.75 | 0.0677 0.0074 0.0751 | 1.5194</item>
- <item>45 | 1.75 | 0.0659 0.0084 0.0743 | 1.4626</item>
- <item>57 | 1.50 | 0.0651 0.0062 0.0713 | 1.0900</item>
- <item>58 | 1.50 | 0.0610 0.0089 0.0700 | 1.0730</item>
- <item>59 | 1.50 | 0.0597 0.0098 0.0695 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 174s</item>
- <item>Prepare output 12s</item>
- <item>186s</item>
- <item>Jacobian determinant (RMS): 0.008 0.037 0.081 0.121 0.162 | 0.175123</item>
- <item>Template Matching: 0.092 0.224 0.222 0.198 0.179 | 0.179168</item>
- <item>Write result maps: 31s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 31s</item>
- <item>CSF distance: 18s</item>
- <item>PBT2x thickness: 51s</item>
- <item>106s</item>
- <item>Create initial surface 100s</item>
- <item>Topology correction: 122s</item>
- <item>Surface refinement: 132s</item>
- <item>Reduction of surface collisions with optimization: 86s</item>
- <item>Spherical mapping with areal smoothing 87s</item>
- <item>Spherical registration 269s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 30s</item>
- <item>CSF distance: 16s</item>
- <item>PBT2x thickness: 49s</item>
- <item>102s</item>
- <item>Create initial surface 93s</item>
- <item>Topology correction: 103s</item>
- <item>Surface refinement: 120s</item>
- <item>Reduction of surface collisions with optimization: 82s</item>
- <item>Spherical mapping with areal smoothing 102s</item>
- <item>Spherical registration 266s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.6219 0.7243 mm</item>
- <item>Surface intensity / position RMSE: 0.0902 / 0.1149</item>
- <item>Euler number / defect number / defect size: 166.0 / 61.0 / 4.73%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_29589/ds/sub-1282/surf/lh.thickness.sub-1282_ses-01_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_29589/ds/sub-1282/surf/rh.thickness.sub-1282_ses-01_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_29589/ds/sub-1282/sub-1282_ses-01_T1w.nii</item>
- <item>Surface ROI estimation: 7s</item>
- <item>Surface and thickness estimation takes: 1876s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 10s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 39s</item>
- <item>ROI estimation of 'lpba40' atlas 12s</item>
- <item>ROI estimation of 'hammers' atlas 27s</item>
- <item>ROI estimation of 'thalamus' atlas 2s</item>
- <item>ROI estimation of 'ibsr' atlas 9s</item>
- <item>ROI estimation of 'aal3' atlas 15s</item>
- <item>ROI estimation of 'mori' atlas 23s</item>
- <item>ROI estimation of 'anatomy3' atlas 36s</item>
- <item>ROI estimation of 'julichbrain' atlas 45s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 17s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 31s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 70s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 102s</item>
- <item>Write results 102s</item>
- <item>440s</item>
- <item>Quality check: 5s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_29589/ds/sub-1282/report/catreport_sub-1282_ses-01_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 58 minute(s) and 12 second(s).</item>
- <item>Image Quality Rating (IQR): 83.58% (B)</item>
- <item>GM volume (GMV): 53.52% (858.84 / 1604.69 ml)</item>
- <item>GM thickness (GMT): 2.62 0.73 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_29589/ds/sub-1282/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_29589/ds/sub-1282/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_29589/ds/sub-1282/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|