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- <ngaus>[1 1 2 3 4 2]</ngaus>
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- <species>human</species>
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- <shootingsurf>Template_T1</shootingsurf>
- <pth_templates>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym</pth_templates>
- <darteltpm>
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- </darteltpm>
- <shootingtpm>
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- </shootingtpm>
- <shootingT1>
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- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
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- </T1>
- <cat12atlas>
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- </cat12atlas>
- <pbtres>0.5</pbtres>
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- <verb>2</verb>
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- <fontsize>10</fontsize>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
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- <td>
- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
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- <td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
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- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot</td>
- <td>0</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
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- <td>HCP</td>
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- <td>Schaefer2018_100P_17N</td>
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- <td>1</td>
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- <td>Schaefer2018_200P_17N</td>
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- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_400P_17N</td>
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- <td>1</td>
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- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
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- <td>0</td>
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- <res_BB>0</res_BB>
- <tissue_mn>[12.621000289917 90.0659255981445 179.840774536133 298.789733886719]</tissue_mn>
- <tissue_mnr>[0.0422404110431671 0.301435828208923 0.601897478103638 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[41.2831671620946 40.9489143578358 37.6781857626668 27.5763043458044]</tissue_std>
- <tissue_stdr>[0.144261628389359 0.143093600869179 0.131664231419563 0.096363790333271]</tissue_stdr>
- <contrast>104.636543273926</contrast>
- <contrastr>0.350201278924942</contrastr>
- <NCR>0.141501560807228</NCR>
- <ICR>0.551715970039368</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[1.875 1.79998779296875 1.875]</res_vx_vol>
- <res_RMS>1.85033384869114</res_RMS>
- <res_BB>0.5</res_BB>
- <tissue_mn>[8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>2.83031415939331</contrastr>
- <NCR>2.36235380172729</NCR>
- <ICR>1.82816469669342</ICR>
- <SurfaceEulerNumber>2.63265306122449</SurfaceEulerNumber>
- <SurfaceDefectArea>1.36394660502273</SurfaceDefectArea>
- <SurfaceDefectNumber>2.375</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.58507835865021</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.72428202629089</SurfacePositionRMSE>
- <IQR>2.2024608449285</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>1980</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20220709-170923</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>34</SurfaceEulerNumber>
- <SurfaceDefectArea>1.4557864200909</SurfaceDefectArea>
- <SurfaceDefectNumber>27.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0792539194226265</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0862141028046608</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>34</EC_abs>
- <defect_size>1.4557864200909</defect_size>
- <vol_abs_CGW>[228.210666491284 712.86029252708 469.585552185248 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.602923530620687</vol_abs_WMH>
- <vol_rel_WMH>0.00042740633586716</vol_rel_WMH>
- <surf_TSA>1938.95084287664</surf_TSA>
- <vol_TIV>1410.65651120361</vol_TIV>
- <vol_rel_CGW>[0.161776211770056 0.505339384084966 0.332884404144978 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.51300952557941 0.653419280290913]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.5437912940979 0.771031692713088 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.84036051642858 0.273914701007964 0.268476484474305;2.54092453617005 0.191413442516001 0.434129289994552;3.22451004342796 0.275566405168732 0.297394225531142]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.792499272883636 0.299241724235135 0.647739426349052;4.07751220574933 0.285099626195439 0.352260573650948]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.00270511630669</vol_TIV>
- <vol_rel_CGW>[0.755319895295549 6.92563549003171 3.82838369513251 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.04274063358672</vol_rel_WMH>
- <surf_TSA>8.61777490728417</surf_TSA>
- <SQR>5.6696941825266</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0.120155588785807 1 1 10946.5979896903 0.523636713703668]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.0420925654470921 0.0414619445800781 0.25667604804039]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[888.397154588068 403.571849826399 415.625689151287 1023.46184948434 1334.48298620182 8972.23477554318]</SPMvols0>
- <SPMvols1>[757.686282532075 372.935268647811 246.299337132223 1019.76732283925 1028.74524897085 9016.45398002628]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[97.4253005981445 205.379196166992 291.502593994141]</T3th>
- <Tth>
- <T3th>[0 0 17.6304359436035 97.4253005981445 205.379196166992 291.502593994141 388.541259765625 1185.26672363281]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.017378143966198 0.0641253069043159 0.0708958059549332 0 0]</dtc>
- <ll>[0.0839582537116409 0 0.0839582537116409 0;0.207001923083687 0.00984999712775735 0.216851920211444 2100.4921875;0.207001923083687 0.00984999712775735 0.216851920211444 2100.4921875]</ll>
- <rmsdtc>[0.0412043146789074 0.0883431434631348 0.101933531463146]</rmsdtc>
- <rmsgdt>[0.0298137757927179 0.0474990084767342 0.060469213873148]</rmsgdt>
- <rmsdt>0.101933531463146</rmsdt>
- <dt>0.0708958059549332</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00704079866409302 0.0324364528059959 0.0365367233753204 0.0480574853718281 0.056753221899271 0.0637036710977554]</dtc>
- <ll>[0.0858383133250747 0 0.0858383133250747 0;0.224391040903541 0.0139634605845543 0.238354501488095 7147.54638671875;0.22155856700319 0.0149336603673587 0.236492227370549 10747.9345703125;0.198422496248627 0.0195052372424351 0.217927733491063 21031.951171875;0.180763616605682 0.0236569963295001 0.204420612935182 41384.4375;0.180763616605682 0.0236569963295001 0.204420612935182 41384.4375]</ll>
- <rmsdtc>[0.00845289416611195 0.0304224062711 0.0540641210973263 0.0791179314255714 0.110103689134121 0.118251599371433]</rmsdtc>
- <rmsgdt>[0.00278827990405262 0.0116261197254062 0.0292493682354689 0.0518140010535717 0.0741128697991371 0.0809969007968903]</rmsgdt>
- <rmsdt>0.118251599371433</rmsdt>
- <dt>0.0637036710977554</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r1980: 1/1: ./dir_56685/ds/sub-1267/sub-1267_ses-02_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 120s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 10s</item>
- <item>Estimate background 12s</item>
- <item>Initial correction 23s</item>
- <item>Refine background 5s</item>
- <item>Final correction 11s</item>
- <item>Final scaling 8s</item>
- <item>79s</item>
- <item>Correct center-of-mass 6s</item>
- <item>Affine registration 21s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 105s</item>
- <item>SPM preprocessing 1 (estimate 2): 79s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 27s</item>
- <item>Update Segmentation 28s</item>
- <item>Update Skull-Stripping 65s</item>
- <item>Update probability maps 14s</item>
- <item>134s</item>
- <item>Global intensity correction: 25s</item>
- <item>SANLM denoising after intensity normalization (medium): 20s</item>
- <item>Fast Optimized Shooting registration 46s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 5s</item>
- <item>Prepare partitions 3s</item>
- <item>Prepare segments (LASmod = 1.19) 21s</item>
- <item>Estimate local tissue thresholds (WM) 29s</item>
- <item>Estimate local tissue thresholds (GM) 47s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 60s</item>
- <item>171s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 11s</item>
- <item>Major structures 5s</item>
- <item>Ventricle detection 20s</item>
- <item>Blood vessel detection 16s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.05) 38s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 2s</item>
- <item>Side alignment 5s</item>
- <item>Final corrections 7s</item>
- <item>104s</item>
- <item>Blood vessel correction (BVCstr=0.50): 3s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.06): 48s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.06,0.68 0.08,0.98 0.05]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 6s</item>
- <item>Level 1 cleanup (brain masking) 4s</item>
- <item>Level 2 cleanup (CSF correction) 2s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 4s</item>
- <item>17s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0858 0.0000 0.0858 | 32.0000</item>
- <item>2 | 2.50 | 0.0838 0.0010 0.0848 | 29.4886</item>
- <item>3 | 2.50 | 0.0832 0.0015 0.0847 | 26.9772</item>
- <item>4 | 2.50 | 0.0829 0.0016 0.0846 | 24.6107</item>
- <item>5 | 2.50 | 0.0827 0.0017 0.0845 | 22.6548</item>
- <item>6 | 2.50 | 0.0825 0.0018 0.0843 | 20.6989</item>
- <item>7 | 2.50 | 0.0823 0.0019 0.0842 | 18.9688</item>
- <item>8 | 2.50 | 0.0821 0.0020 0.0840 | 17.4455</item>
- <item>9 | 2.50 | 0.0819 0.0020 0.0839 | 15.9223</item>
- <item>10 | 2.50 | 0.0816 0.0021 0.0837 | 14.6627</item>
- <item>11 | 2.50 | 0.0814 0.0021 0.0835 | 13.4764</item>
- <item>12 | 2.50 | 0.0812 0.0022 0.0833 | 12.3015</item>
- <item>13 | 2.50 | 0.0809 0.0023 0.0832 | 11.3776</item>
- <item>14 | 2.50 | 0.0807 0.0023 0.0830 | 10.4537</item>
- <item>15 | 2.25 | 0.0816 0.0024 0.0839 | 9.5920</item>
- <item>16 | 2.25 | 0.0790 0.0037 0.0826 | 8.8725</item>
- <item>17 | 2.25 | 0.0780 0.0041 0.0821 | 8.1530</item>
- <item>18 | 2.25 | 0.0772 0.0043 0.0816 | 7.5234</item>
- <item>19 | 2.25 | 0.0767 0.0045 0.0812 | 6.9630</item>
- <item>20 | 2.25 | 0.0762 0.0045 0.0807 | 6.4027</item>
- <item>21 | 2.25 | 0.0757 0.0046 0.0803 | 5.9447</item>
- <item>22 | 2.25 | 0.0752 0.0047 0.0799 | 5.5083</item>
- <item>23 | 2.25 | 0.0748 0.0047 0.0795 | 5.0803</item>
- <item>29 | 2.00 | 0.0776 0.0032 0.0808 | 3.3283</item>
- <item>30 | 2.00 | 0.0739 0.0050 0.0788 | 3.1221</item>
- <item>43 | 1.75 | 0.0732 0.0028 0.0760 | 1.5785</item>
- <item>44 | 1.75 | 0.0679 0.0055 0.0734 | 1.5194</item>
- <item>45 | 1.75 | 0.0661 0.0065 0.0726 | 1.4626</item>
- <item>57 | 1.50 | 0.0651 0.0047 0.0699 | 1.0900</item>
- <item>58 | 1.50 | 0.0615 0.0071 0.0686 | 1.0730</item>
- <item>59 | 1.50 | 0.0603 0.0079 0.0681 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 216s</item>
- <item>Prepare output 16s</item>
- <item>232s</item>
- <item>Jacobian determinant (RMS): 0.008 0.030 0.054 0.079 0.110 | 0.118252</item>
- <item>Template Matching: 0.086 0.224 0.222 0.198 0.181 | 0.180764</item>
- <item>Write result maps: 40s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 44s</item>
- <item>CSF distance: 21s</item>
- <item>PBT2x thickness: 62s</item>
- <item>134s</item>
- <item>Create initial surface 115s</item>
- <item>Topology correction: 115s</item>
- <item>Surface refinement: 109s</item>
- <item>Reduction of surface collisions with optimization: 75s</item>
- <item>Spherical mapping with areal smoothing 99s</item>
- <item>Spherical registration 355s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 42s</item>
- <item>CSF distance: 20s</item>
- <item>PBT2x thickness: 59s</item>
- <item>127s</item>
- <item>Create initial surface 104s</item>
- <item>Topology correction: 113s</item>
- <item>Surface refinement: 119s</item>
- <item>Reduction of surface collisions with optimization: 73s</item>
- <item>Spherical mapping with areal smoothing 97s</item>
- <item>Spherical registration 330s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.5131 0.6533 mm</item>
- <item>Surface intensity / position RMSE: 0.0793 / 0.0862</item>
- <item>Euler number / defect number / defect size: 34.0 / 27.5 / 1.46%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_56685/ds/sub-1267/surf/lh.thickness.sub-1267_ses-02_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_56685/ds/sub-1267/surf/rh.thickness.sub-1267_ses-02_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_56685/ds/sub-1267/sub-1267_ses-02_T1w.nii</item>
- <item>Surface ROI estimation: 11s</item>
- <item>Surface and thickness estimation takes: 2092s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 15s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 53s</item>
- <item>ROI estimation of 'lpba40' atlas 15s</item>
- <item>ROI estimation of 'hammers' atlas 37s</item>
- <item>ROI estimation of 'thalamus' atlas 3s</item>
- <item>ROI estimation of 'ibsr' atlas 14s</item>
- <item>ROI estimation of 'aal3' atlas 22s</item>
- <item>ROI estimation of 'mori' atlas 31s</item>
- <item>ROI estimation of 'anatomy3' atlas 46s</item>
- <item>ROI estimation of 'julichbrain' atlas 67s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 24s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 40s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 94s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 130s</item>
- <item>Write results 132s</item>
- <item>593s</item>
- <item>Quality check: 7s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_56685/ds/sub-1267/report/catreport_sub-1267_ses-02_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 68 minute(s) and 17 second(s).</item>
- <item>Image Quality Rating (IQR): 82.98% (B-)</item>
- <item>GM volume (GMV): 50.53% (712.86 / 1410.66 ml)</item>
- <item>GM thickness (GMT): 2.51 0.65 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_56685/ds/sub-1267/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_56685/ds/sub-1267/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_56685/ds/sub-1267/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
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