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- <ngaus>[1 1 2 3 4 2]</ngaus>
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- <shootingsurf>Template_T1</shootingsurf>
- <pth_templates>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym</pth_templates>
- <darteltpm>
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- </darteltpm>
- <shootingtpm>
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- </shootingtpm>
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- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
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- </T1>
- <cat12atlas>
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- </cat12atlas>
- <pbtres>0.5</pbtres>
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- <verb>2</verb>
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- <fontsize>10</fontsize>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
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- <td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
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- <td>
- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
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- <td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
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- <td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
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- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot</td>
- <td>0</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
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- <td>HCP</td>
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- <td>Schaefer2018_100P_17N</td>
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- <td>1</td>
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- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_400P_17N</td>
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- <td>1</td>
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- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
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- <res_BB>0</res_BB>
- <tissue_mn>[2.49300003051758 14.3294954299927 30.3072128295898 55.0764122009277]</tissue_mn>
- <tissue_mnr>[0.0452643893659115 0.260174810886383 0.55027574300766 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[1.23671259823468 11.4184221187942 7.50813584187741 5.360365359254]</tissue_std>
- <tissue_stdr>[0.0235190633684397 0.217148751020432 0.142785251140594 0.101940236985683]</tissue_stdr>
- <contrast>18.6777400970459</contrast>
- <contrastr>0.339124143123627</contrastr>
- <NCR>0.156130835413933</NCR>
- <ICR>0.539323627948761</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[1.875 1.79998779296875 1.875]</res_vx_vol>
- <res_RMS>1.85033384869114</res_RMS>
- <res_BB>0.5</res_BB>
- <tissue_mn>[8.5838794708252 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.62399926260562 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>2.99647116661072</contrastr>
- <NCR>2.57236337661743</NCR>
- <ICR>1.79742968082428</ICR>
- <SurfaceEulerNumber>10.5</SurfaceEulerNumber>
- <SurfaceDefectArea>2.6631756981941</SurfaceDefectArea>
- <SurfaceDefectNumber>4.65</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.90770053863525</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>2.65739917755127</SurfacePositionRMSE>
- <IQR>2.3793659518777</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>1980</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20220709-200113</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>212</SurfaceEulerNumber>
- <SurfaceDefectArea>6.65270279277638</SurfaceDefectArea>
- <SurfaceDefectNumber>73</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0953850299119949</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.132869958877563</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>212</EC_abs>
- <defect_size>6.65270279277638</defect_size>
- <vol_abs_CGW>[142.39676752967 798.387557288268 508.215530901095 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.794549643747947</vol_abs_WMH>
- <vol_rel_WMH>0.000548343494039666</vol_rel_WMH>
- <surf_TSA>2029.20729178425</surf_TSA>
- <vol_TIV>1448.99985571903</vol_TIV>
- <vol_rel_CGW>[0.0982724511445923 0.550992157892304 0.350735390963103 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.52162686906809 0.708920498907283]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.58883762359619 0.920979497488189 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.71267232699677 0.349340334904615 0.238678510388448;2.52615523302296 0.213743936597534 0.423153390924206;3.25019199806932 0.296168472387701 0.338168098687347]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.598799493356055 0.230858112281971 0.718956043956044;4.10026017622825 0.240763061469547 0.281043956043956]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.05698942264707</vol_TIV>
- <vol_rel_CGW>[0.5 7.74554881272099 4.14898331471091 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.05483434940397</vol_rel_WMH>
- <surf_TSA>8.62235958550787</surf_TSA>
- <SQR>6.33939293394739</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0.193746864795685 1 1 10699.7450446397 0.523069500773514]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.043766338378191 0.0439506769180298 0.10271529853344]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[961.382107923452 453.353677315992 278.45260138445 732.863471668713 1808.02692434108 9690.45379034558]</SPMvols0>
- <SPMvols1>[829.360845167777 423.250776801214 143.667182742182 526.799507351202 1041.81145734924 10308.0253792558]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[15.1115999221802 35.4364013671875 54.9328002929688]</T3th>
- <Tth>
- <T3th>[0 0 2.45130896568298 15.1115999221802 35.4364013671875 54.9328002929688 74.8433990478516 233.26579284668]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0111180320382118 0.0330610051751137 0.0351267121732235 0 0]</dtc>
- <ll>[0.0809581156681423 0 0.0809581156681423 0;0.206734885116156 0.00632951869254782 0.213064403808704 1349.75720214844;0.206734885116156 0.00632951869254782 0.213064403808704 1349.75720214844]</ll>
- <rmsdtc>[0.0337810888886452 0.047658659517765 0.0578421130776405]</rmsdtc>
- <rmsgdt>[0.0259588714689016 0.0342369899153709 0.0445118583738804]</rmsgdt>
- <rmsdt>0.0578421130776405</rmsdt>
- <dt>0.0351267121732235</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00373870180919766 0.0147183761000633 0.0278279278427362 0.0426127426326275 0.0538341365754604 0.0581098385155201]</dtc>
- <ll>[0.0859969341837409 0 0.0859969341837409 0;0.224510057997558 0.0115338045634921 0.23604386256105 5903.8662109375;0.214053915837168 0.0145241798976535 0.228578095734822 10453.2265625;0.196148270102534 0.0180686088482312 0.214216878950766 19482.875;0.180130132397521 0.0220882533963986 0.202218385793919 38640.15234375;0.180130132397521 0.0220882533963986 0.202218385793919 38640.15234375]</ll>
- <rmsdtc>[0.00520196976140141 0.0191217940300703 0.0410667769610882 0.0714384391903877 0.10188752412796 0.109379932284355]</rmsdtc>
- <rmsgdt>[0.0026522628031671 0.0105382651090622 0.026781652122736 0.0503491461277008 0.0737648457288742 0.0817426145076752]</rmsgdt>
- <rmsdt>0.109379932284355</rmsdt>
- <dt>0.0581098385155201</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r1980: 1/1: ./dir_59705/ds/sub-1043/sub-1043_ses-01_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 177s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 11s</item>
- <item>Estimate background 14s</item>
- <item>Initial correction 23s</item>
- <item>Refine background 5s</item>
- <item>Final correction 12s</item>
- <item>Final scaling 8s</item>
- <item>85s</item>
- <item>Correct center-of-mass 6s</item>
- <item>Affine registration 28s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 12s</item>
- <item>Use initial fine affine registration. 95s</item>
- <item>SPM preprocessing 1 (estimate 2): 88s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 29s</item>
- <item>Update Segmentation 30s</item>
- <item>Update Skull-Stripping 70s</item>
- <item>Update probability maps 15s</item>
- <item>144s</item>
- <item>Global intensity correction: 27s</item>
- <item>SANLM denoising after intensity normalization (medium): 20s</item>
- <item>Fast Optimized Shooting registration 48s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 6s</item>
- <item>Prepare partitions 10s</item>
- <item>Prepare segments (LASmod = 1.05) 23s</item>
- <item>Estimate local tissue thresholds (WM) 34s</item>
- <item>Estimate local tissue thresholds (GM) 51s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 59s</item>
- <item>187s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 12s</item>
- <item>Major structures 5s</item>
- <item>Ventricle detection 25s</item>
- <item>Blood vessel detection 16s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 41s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 2s</item>
- <item>Side alignment 5s</item>
- <item>Final corrections 8s</item>
- <item>115s</item>
- <item>Blood vessel correction (BVCstr=0.50): 3s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.06): 46s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.05,0.68 0.08,0.98 0.05]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 6s</item>
- <item>Level 1 cleanup (brain masking) 4s</item>
- <item>Level 2 cleanup (CSF correction) 2s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 4s</item>
- <item>17s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0860 0.0000 0.0860 | 32.0000</item>
- <item>2 | 2.50 | 0.0827 0.0013 0.0839 | 29.4886</item>
- <item>3 | 2.50 | 0.0819 0.0018 0.0837 | 26.9772</item>
- <item>4 | 2.50 | 0.0815 0.0019 0.0835 | 24.6107</item>
- <item>5 | 2.50 | 0.0813 0.0020 0.0833 | 22.6548</item>
- <item>6 | 2.50 | 0.0811 0.0020 0.0831 | 20.6989</item>
- <item>7 | 2.50 | 0.0809 0.0020 0.0829 | 18.9688</item>
- <item>8 | 2.50 | 0.0807 0.0021 0.0828 | 17.4455</item>
- <item>9 | 2.50 | 0.0805 0.0020 0.0826 | 15.9223</item>
- <item>10 | 2.50 | 0.0803 0.0021 0.0824 | 14.6627</item>
- <item>11 | 2.50 | 0.0801 0.0021 0.0822 | 13.4764</item>
- <item>12 | 2.50 | 0.0799 0.0021 0.0820 | 12.3015</item>
- <item>13 | 2.50 | 0.0797 0.0021 0.0818 | 11.3776</item>
- <item>14 | 2.50 | 0.0795 0.0021 0.0816 | 10.4537</item>
- <item>15 | 2.25 | 0.0789 0.0021 0.0810 | 9.5920</item>
- <item>16 | 2.25 | 0.0761 0.0034 0.0795 | 8.8725</item>
- <item>17 | 2.25 | 0.0753 0.0037 0.0791 | 8.1530</item>
- <item>18 | 2.25 | 0.0748 0.0038 0.0787 | 7.5234</item>
- <item>29 | 2.00 | 0.0779 0.0018 0.0798 | 3.3283</item>
- <item>30 | 2.00 | 0.0728 0.0041 0.0769 | 3.1221</item>
- <item>31 | 2.00 | 0.0714 0.0048 0.0762 | 2.9160</item>
- <item>43 | 1.75 | 0.0714 0.0027 0.0741 | 1.5785</item>
- <item>44 | 1.75 | 0.0668 0.0052 0.0720 | 1.5194</item>
- <item>45 | 1.75 | 0.0654 0.0060 0.0714 | 1.4626</item>
- <item>57 | 1.50 | 0.0646 0.0043 0.0689 | 1.0900</item>
- <item>58 | 1.50 | 0.0611 0.0066 0.0678 | 1.0730</item>
- <item>59 | 1.50 | 0.0600 0.0074 0.0674 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 210s</item>
- <item>Prepare output 17s</item>
- <item>226s</item>
- <item>Jacobian determinant (RMS): 0.005 0.019 0.041 0.071 0.102 | 0.109380</item>
- <item>Template Matching: 0.086 0.225 0.214 0.196 0.180 | 0.180130</item>
- <item>Write result maps: 42s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 39s</item>
- <item>CSF distance: 22s</item>
- <item>PBT2x thickness: 62s</item>
- <item>131s</item>
- <item>Create initial surface 112s</item>
- <item>Topology correction: 133s</item>
- <item>Surface refinement: 143s</item>
- <item>Reduction of surface collisions with optimization: 92s</item>
- <item>Spherical mapping with areal smoothing 116s</item>
- <item>Spherical registration 341s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 38s</item>
- <item>CSF distance: 20s</item>
- <item>PBT2x thickness: 61s</item>
- <item>126s</item>
- <item>Create initial surface 106s</item>
- <item>Topology correction: 128s</item>
- <item>Surface refinement: 121s</item>
- <item>Reduction of surface collisions with optimization: 87s</item>
- <item>Spherical mapping with areal smoothing 103s</item>
- <item>Spherical registration 346s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.5213 0.7080 mm</item>
- <item>Surface intensity / position RMSE: 0.0954 / 0.1329</item>
- <item>Euler number / defect number / defect size: 212.0 / 73.0 / 6.65%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_59705/ds/sub-1043/surf/lh.thickness.sub-1043_ses-01_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_59705/ds/sub-1043/surf/rh.thickness.sub-1043_ses-01_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_59705/ds/sub-1043/sub-1043_ses-01_T1w.nii</item>
- <item>Surface ROI estimation: 10s</item>
- <item>Surface and thickness estimation takes: 2215s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 14s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 50s</item>
- <item>ROI estimation of 'lpba40' atlas 14s</item>
- <item>ROI estimation of 'hammers' atlas 36s</item>
- <item>ROI estimation of 'thalamus' atlas 3s</item>
- <item>ROI estimation of 'ibsr' atlas 12s</item>
- <item>ROI estimation of 'aal3' atlas 22s</item>
- <item>ROI estimation of 'mori' atlas 29s</item>
- <item>ROI estimation of 'anatomy3' atlas 42s</item>
- <item>ROI estimation of 'julichbrain' atlas 53s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 21s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 36s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 86s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 128s</item>
- <item>Write results 129s</item>
- <item>546s</item>
- <item>Quality check: 7s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_59705/ds/sub-1043/report/catreport_sub-1043_ses-01_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 71 minute(s) and 0 second(s).</item>
- <item>Image Quality Rating (IQR): 81.21% (B-)</item>
- <item>GM volume (GMV): 55.10% (798.39 / 1449.00 ml)</item>
- <item>GM thickness (GMT): 2.52 0.71 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_59705/ds/sub-1043/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_59705/ds/sub-1043/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_59705/ds/sub-1043/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
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